BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482636 Length=1513 Score E Sequences producing significant alignments: (Bits) Value AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 |... 2254 0.0 AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 |... 1668 0.0 AT1G42090.1 | Symbols: | pseudogene, similar to betaine/prolin... 268 9e-71 AT1G41890.1 | Symbols: | pseudogene, proline transporter 2, si... 91.6 2e-17 > AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 | chr2:15343006-15345337 REVERSE LENGTH=1597 Length=1597 Score = 2254 bits (1220), Expect = 0.0 Identities = 1395/1479 (94%), Gaps = 13/1479 (1%) Strand=Plus/Plus Query 1 TTCAACAACTTCTCATTTCTAAAACCTTTTAAAAATCTCTCTACCACTTCTAATTGGACT 60 ||||||||||||| |||||||||| |||||||||||||||| ||||||||| ||||||| Sbjct 15 TTCAACAACTTCTGATTTCTAAAATCTTTTAAAAATCTCTCCGCCACTTCTAGTTGGACT 74 Query 61 TGATTTCCCACCCACCATAGACTCTTCTTTTCCATTGTTAGCGACCATCTATTATAAAGG 120 |||||| | |||||||| ||| | || |||||| ||||||||||||||| ||| Sbjct 75 TGATTT----CTCACCATAG-----TCTGTCCCGTTGTTACCGACCATCTATTATATAGG 125 Query 121 GAAAGGCTCTTAGCTGCAGAGACACAATAACCATTTGGTGA--TCATGAGCGCTAAGAAT 178 ||||| ||||||||| |||||||||||||||||||||| || |||||| | |||||||| Sbjct 126 GAAAGTCTCTTAGCTACAGAGACACAATAACCATTTGGAGAGGTCATGAACTCTAAGAAT 185 Query 179 CGCATAAACAATGTCGGAGAAGATGTTGATATCGAAATCCCTGACACTGCTCATCAGATA 238 ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 186 CGCATAAACAATGTCGGGGAAGGTGTTGATATCGAAATCCCTGACACTGCTCATCAGATT 245 Query 239 AGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATAC 298 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 246 AGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACAAGTATAAACAGCGCATAC 305 Query 299 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGT 358 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 306 GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGT 365 Query 359 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 366 CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG 425 Query 419 TTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTCATTTACGGTAGAAAG 478 |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| Sbjct 426 TTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAG 485 Query 479 GCTTATTGTCTTACATGGGTGCTGCAATATGTCAATCTTTTCATGATAAACTGTGGATTC 538 ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||| Sbjct 486 GCTTATTGTCTTACATGGGTGTTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTC 545 Query 539 ATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGGTTTTTAGGGATGATCATGCC 598 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 546 ATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCATGCC 605 Query 599 ATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTTGTGCGGTTTTTGCGATTGGG 658 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| Sbjct 606 ATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTGTGCGGTTTTTGCTATTGGA 665 Query 659 ATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCGGTTTCGA-TCATCCTCAGCCTCAT 717 || |||||||| || ||||||||||| |||||||||||||||| | |||||||||||||| Sbjct 666 ATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTCGACT-ATCCTCAGCCTCAT 724 Query 718 CTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 777 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 725 CTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA 784 Query 778 TTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCAAC 837 ||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| || Sbjct 785 TTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTAC 844 Query 838 ACTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAATTCAGGCAACAGTAAGGCAACC 897 |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 845 ACTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATTCAGGCAACAGTAAAGCAACC 904 Query 898 GGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 957 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 AGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT 964 Query 958 GTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGGCTTATCTACT 1017 || ||||||||||||||||| |||||||||||||||||||| |||||| | |||||||| Sbjct 965 GTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACT 1024 Query 1018 AAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1077 ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1025 AAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCA 1084 Query 1078 ATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATATGAGTATATGGACACAAAGTT 1137 |||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1085 ATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTT 1144 Query 1138 TGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1197 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1145 TGGGATCAAAGGAAACCCATTGGCATTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG 1204 Query 1198 CGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTTACCATTCCTTGGGGACTTCAT 1257 |||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 1205 CGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCAT 1264 Query 1258 GAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGTA 1317 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1265 GAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATTCATTCTAGCCAACCACATGTA 1324 Query 1318 CTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAAGCTATGGCATTGGCTCAACGT 1377 |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 1325 CTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAAGCTATGCCATTGGCTCAACGT 1384 Query 1378 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1385 TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT 1444 Query 1438 TGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476 ||||||||| ||||||||||||||||||||||||||||| Sbjct 1445 TGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT 1483 > AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 | chr2:16655679-16658331 FORWARD LENGTH=1801 Length=1801 Score = 1668 bits (903), Expect = 0.0 Identities = 1184/1320 (90%), Gaps = 17/1320 (1%) Strand=Plus/Plus Query 170 GCTAAGAATCGCATAAA-CAATGTC-G-GA--GA-A-GA---TGTTGATATCGAAATCCC 219 ||||||||||||| ||| ||||||| | || || | || |||||||||||||||||| Sbjct 359 GCTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCC 417 Query 220 TGACACTGCTCATCAGATAAGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAAC 279 ||||||||||||||| || ||| |||||||||||||||||| ||||||||| |||| || Sbjct 418 TGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCAC 477 Query 280 CAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATG 339 | ||||||||||||| || ||||||||||||||||||||| | |||||||||||||| || Sbjct 478 CGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTG 537 Query 340 GACTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCT 399 || ||||||||||||||||||| || |||||||||||||||| || |||||||||||||| Sbjct 538 GATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCT 597 Query 400 CGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGG 459 |||| |||||||||||||||||||||| ||| |||||||||||||||||||| || || Sbjct 598 AATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGG 657 Query 460 GTTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-CTGCAATATGTCAATCTTT 518 |||||||||||||| ||||||||| ||||||||||| | |||||||||| ||||||| Sbjct 658 ATTCATTTACGGTAGGAAGGCTTATCATCTTACATGGG-GATTGCAATATGTTAATCTTT 716 Query 519 TCATGATAAACTGTGGATTCATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGG 578 ||||||| || ||||||||||| || |||||||||||||| |||||||||||||||||| Sbjct 717 TCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGC 776 Query 579 TTTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTT 638 |||| |||||||||||| ||||||| |||||||||||||||||||| | ||| |||||| Sbjct 777 TTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTT 836 Query 639 GTGCGGTTTTTGCGATTGGGATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCG-GTT 697 ||||| |||| || |||||||| ||||||||||| ||||||||| ||||||||| | ||| Sbjct 837 GTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTG-GAGTT 895 Query 698 TCGATCATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGA 757 |||| | ||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||| Sbjct 896 TCGACCTTCCTCAGTCTCATCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGA 955 Query 758 GTTAAAGCACCTTCAAGAGATTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACC 817 || ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 956 GTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACC 1015 Query 818 ATCACTGGAGCAGCCGCAACA-CTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAAT 876 ||||| ||||||||||||| | || ||||||| ||||||||| || |||||||||||||| Sbjct 1016 ATCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAAT 1074 Query 877 TCAGGCAACAGTAAGGCAACCGGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATT 936 |||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1075 TCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATT 1134 Query 937 CACGGTGGGTGTTTTACCGATGTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATC 996 ||| | ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| Sbjct 1135 CACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATC 1194 Query 997 CTCAACCTCGGCTTATCTACTAAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGC 1056 |||||||||| | ||||||||||||| |||||||||||| | ||||||||||||||||| Sbjct 1195 CTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGC 1254 Query 1057 TAACATCTCCGCTATCCTTCAATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATA 1116 |||| |||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||| Sbjct 1255 TAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATA 1314 Query 1117 TGAGTATATGGACACAAAGTTTGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTT 1176 |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| || | Sbjct 1315 TGAGTACATGGACACAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCT 1374 Query 1177 GTTTAGGATCATGGCAAGAGGCGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTT 1236 ||||||||||||||| |||||||||||||||||||| || |||||| | ||||| || || Sbjct 1375 GTTTAGGATCATGGCGAGAGGCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTT 1434 Query 1237 ACCATTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATT 1296 || ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1435 GCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT 1494 Query 1297 CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAA 1356 |||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||||| Sbjct 1495 CATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAA 1554 Query 1357 GCTATGGCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC 1416 ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1555 GCTATGGCATTGGCTTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGC 1614 Query 1417 AGCTCTTAGGCTCATCGCCCTTGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT 1476 |||| | || ||||||||| |||| ||||| || ||||| |||||||||||||||||||| Sbjct 1615 AGCTGTCAGACTCATCGCCGTTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATT 1674 > AT1G42090.1 | Symbols: | pseudogene, similar to betaine/proline transporter, similar to proline transporter 1 GI:1769901 from (Arabidopsis thaliana); blastp match of 62% identity and 2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline transporter {Avicennia marina} | chr1:15720083-15720696 REVERSE LENGTH=614 Length=614 Score = 268 bits (145), Expect = 9e-71 Identities = 202/230 (88%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 245 GATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATACGTGTTG 304 |||||||||||||||| ||| || ||||| |||||||||||||| || || || |||||| Sbjct 96 GATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCAGTATAAAAAGTGCCTATGTGTTG 155 Query 305 GGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGTCTTATT 364 |||||||| || ||||||||||||||||| || |||| |||||||||||||||||| ||| Sbjct 156 GGATATTCTGGGACAGTCATGGTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATT 215 Query 365 CTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAGTTTGGT 424 ||||||||||||||||| || || ||||||||||| | ||||||||||||||||||||| Sbjct 216 CTTGCTACTGCAATCTCCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGT 275 Query 425 GGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGG-TTCATTTACGGTA 473 |||||||| |||||||| |||||||| |||| | || ||||| || |||| Sbjct 276 GGCAAAAGACACATTCGTTATAGAGATCTCG-GAGGCTTCATCTATGGTA 324 > AT1G41890.1 | Symbols: | pseudogene, proline transporter 2, similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783 amino acid permease {Oryza sativa} | chr1:15652635-15656463 REVERSE LENGTH=3829 Length=3829 Score = 91.6 bits (49), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 404 GCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTC 463 ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||| Sbjct 2100 GCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTCGCAGGCTTC 2159 Query 464 ATTTACGGTA 473 || || |||| Sbjct 2160 ATCTATGGTA 2169 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74648210415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5