BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg482636

Length=1513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 |...  2254    0.0  
  AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 |...  1668    0.0  
  AT1G42090.1 | Symbols:  | pseudogene, similar to betaine/prolin...   268    9e-71
  AT1G41890.1 | Symbols:  | pseudogene, proline transporter 2, si...  91.6    2e-17


> AT2G36590.1 | Symbols: ProT3, ATPROT3 | proline transporter 3 
| chr2:15343006-15345337 REVERSE LENGTH=1597
Length=1597

 Score = 2254 bits (1220),  Expect = 0.0
 Identities = 1395/1479 (94%), Gaps = 13/1479 (1%)
 Strand=Plus/Plus

Query  1     TTCAACAACTTCTCATTTCTAAAACCTTTTAAAAATCTCTCTACCACTTCTAATTGGACT  60
             ||||||||||||| |||||||||| ||||||||||||||||  ||||||||| |||||||
Sbjct  15    TTCAACAACTTCTGATTTCTAAAATCTTTTAAAAATCTCTCCGCCACTTCTAGTTGGACT  74

Query  61    TGATTTCCCACCCACCATAGACTCTTCTTTTCCATTGTTAGCGACCATCTATTATAAAGG  120
             ||||||    | ||||||||     ||| | || |||||| ||||||||||||||| |||
Sbjct  75    TGATTT----CTCACCATAG-----TCTGTCCCGTTGTTACCGACCATCTATTATATAGG  125

Query  121   GAAAGGCTCTTAGCTGCAGAGACACAATAACCATTTGGTGA--TCATGAGCGCTAAGAAT  178
             ||||| ||||||||| |||||||||||||||||||||| ||  |||||| | ||||||||
Sbjct  126   GAAAGTCTCTTAGCTACAGAGACACAATAACCATTTGGAGAGGTCATGAACTCTAAGAAT  185

Query  179   CGCATAAACAATGTCGGAGAAGATGTTGATATCGAAATCCCTGACACTGCTCATCAGATA  238
             ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| 
Sbjct  186   CGCATAAACAATGTCGGGGAAGGTGTTGATATCGAAATCCCTGACACTGCTCATCAGATT  245

Query  239   AGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATAC  298
             ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  246   AGCAGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACAAGTATAAACAGCGCATAC  305

Query  299   GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGT  358
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  306   GTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGATTGGTGGTGTGGTTGGT  365

Query  359   CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG  418
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  366   CTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAG  425

Query  419   TTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTCATTTACGGTAGAAAG  478
             |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  426   TTTGGTGGCAAAAGACACATTCGCTATAGAGACCTTGCGGGATTCATTTACGGTAGAAAG  485

Query  479   GCTTATTGTCTTACATGGGTGCTGCAATATGTCAATCTTTTCATGATAAACTGTGGATTC  538
             ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||
Sbjct  486   GCTTATTGTCTTACATGGGTGTTGCAATATGTCAATCTTTTCATGATTAATTGTGGTTTC  545

Query  539   ATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGGTTTTTAGGGATGATCATGCC  598
             |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  546   ATCATACTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGCTTTTTAGGGATGATCATGCC  605

Query  599   ATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTTGTGCGGTTTTTGCGATTGGG  658
             ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| 
Sbjct  606   ATGAAGTTACCTCATTTTATAGCTATTGCGGGTCTGATTTGTGCGGTTTTTGCTATTGGA  665

Query  659   ATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCGGTTTCGA-TCATCCTCAGCCTCAT  717
             || |||||||| || ||||||||||| |||||||||||||||| | ||||||||||||||
Sbjct  666   ATTCCTCATTTGTCGGCTCTTGGGATATGGCTTGCGGTTTCGACT-ATCCTCAGCCTCAT  724

Query  718   CTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA  777
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  725   CTATATCGTTGTGGCAATCGTGCTATCGGTTAAAGATGGAGTTAAAGCACCTTCAAGAGA  784

Query  778   TTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCAAC  837
             ||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||| ||
Sbjct  785   TTACGAGATACAAGGATCACCACTAAGCAAACTTTTTACCATCACTGGAGCAGCCGCTAC  844

Query  838   ACTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAATTCAGGCAACAGTAAGGCAACC  897
             |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct  845   ACTAGTTTTCGTATTCAACACAGGGATGCTTCCAGAAATTCAGGCAACAGTAAAGCAACC  904

Query  898   GGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT  957
              || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  905   AGTAGTAAAAAACATGATGAAGGCTCTATACTTTCAATTCACGGTGGGTGTTTTACCGAT  964

Query  958   GTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATCCTCAACCTCGGCTTATCTACT  1017
             ||  ||||||||||||||||| |||||||||||||||||||| |||||| | ||||||||
Sbjct  965   GTTTGCGGTTGTATTCATCGGGTATTGGGCTTACGGATCCTCGACCTCGCCCTATCTACT  1024

Query  1018  AAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGCTAACATCTCCGCTATCCTTCA  1077
             ||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct  1025  AAACAACGTTAATGGTCCACTTTGGGTTAAAGCCCTTGCTAACATCTCCGCTATCCTTCA  1084

Query  1078  ATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATATGAGTATATGGACACAAAGTT  1137
             |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct  1085  ATCCGTTATCTCGTTGCACATTTTTGCAAGTCCAACATATGAGTACATGGACACCAAGTT  1144

Query  1138  TGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG  1197
             |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  1145  TGGGATCAAAGGAAACCCATTGGCATTAAAGAACTTGTTGTTTAGGATCATGGCAAGAGG  1204

Query  1198  CGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTTACCATTCCTTGGGGACTTCAT  1257
             |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct  1205  CGGGTACATAGCAGTTAGTACGCTTCTCTCAGCACTCTTGCCGTTCCTTGGGGACTTCAT  1264

Query  1258  GAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATTCATTCTAGCCAACCACATGTA  1317
             |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  1265  GAGCCTCACTGGTGCAGTGAGCACATTCCCCCTTACATTCATTCTAGCCAACCACATGTA  1324

Query  1318  CTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAAGCTATGGCATTGGCTCAACGT  1377
             |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct  1325  CTATAAGGCTAAGAACAATAAGCTCAATACTTTGCAAAAGCTATGCCATTGGCTCAACGT  1384

Query  1378  TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT  1437
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1385  TGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGCAGCTCTTAGGCTCATCGCCCT  1444

Query  1438  TGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT  1476
             ||||||||| |||||||||||||||||||||||||||||
Sbjct  1445  TGACTCCAAAAACTTCCACGTTTTTGCAGATTTGTAATT  1483


> AT2G39890.1 | Symbols: PROT1, ATPROT1 | proline transporter 1 
| chr2:16655679-16658331 FORWARD LENGTH=1801
Length=1801

 Score = 1668 bits (903),  Expect = 0.0
 Identities = 1184/1320 (90%), Gaps = 17/1320 (1%)
 Strand=Plus/Plus

Query  170   GCTAAGAATCGCATAAA-CAATGTC-G-GA--GA-A-GA---TGTTGATATCGAAATCCC  219
             ||||||||||||| ||| ||||||| | ||  || | ||   ||||||||||||||||||
Sbjct  359   GCTAAGAATCGCA-AAATCAATGTCGGAGATGGAGATGACGTTGTTGATATCGAAATCCC  417

Query  220   TGACACTGCTCATCAGATAAGCCGCGATTCATGGTTTCAGGCAGCGTTCGTTCTGACAAC  279
             ||||||||||||||| || ||| ||||||||||||||||||  ||||||||| |||| ||
Sbjct  418   TGACACTGCTCATCAAATTAGCAGCGATTCATGGTTTCAGGTGGCGTTCGTTTTGACCAC  477

Query  280   CAGTATAAACAGCGCATACGTGTTGGGATATTCAGGAACAGTCATGGTTCCTTTAGGATG  339
             | ||||||||||||| || ||||||||||||||||||||| | |||||||||||||| ||
Sbjct  478   CGGTATAAACAGCGCGTATGTGTTGGGATATTCAGGAACAATTATGGTTCCTTTAGGTTG  537

Query  340   GACTGGTGGTGTGGTTGGTCTTATTCTTGCTACTGCAATCTCACTCTATGCAAACACTCT  399
             || ||||||||||||||||||| || |||||||||||||||| || ||||||||||||||
Sbjct  538   GATTGGTGGTGTGGTTGGTCTTCTTATTGCTACTGCAATCTCTCTTTATGCAAACACTCT  597

Query  400   CGTAGCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGG  459
               |||| |||||||||||||||||||||| ||| |||||||||||||||||||| || ||
Sbjct  598   AATAGCTAAGCTTCATGAGTTTGGTGGCAGAAGACACATTCGCTATAGAGACCTTGCTGG  657

Query  460   GTTCATTTACGGTAGAAAGGCTTATTGTCTTACATGGGTG-CTGCAATATGTCAATCTTT  518
              |||||||||||||| |||||||||  ||||||||||| |  |||||||||| |||||||
Sbjct  658   ATTCATTTACGGTAGGAAGGCTTATCATCTTACATGGG-GATTGCAATATGTTAATCTTT  716

Query  519   TCATGATAAACTGTGGATTCATCATACTAGCTGGTTCCGCTTTAAAGGCTGTTTATGTGG  578
             ||||||| || ||||||||||| || |||||||||||||| |||||||||||||||||| 
Sbjct  717   TCATGATTAATTGTGGATTCATTATCCTAGCTGGTTCCGCCTTAAAGGCTGTTTATGTGC  776

Query  579   TTTTTAGGGATGATCATGCCATGAAGTTACCTCATTTTATAGCCATTTCGGGTCTGATTT  638
             |||| |||||||||||| |||||||  |||||||||||||||||||| | ||| ||||||
Sbjct  777   TTTTCAGGGATGATCATACCATGAAACTACCTCATTTTATAGCCATTGCTGGTTTGATTT  836

Query  639   GTGCGGTTTTTGCGATTGGGATACCTCATTTATCTGCTCTTGGGATCTGGCTTGCG-GTT  697
             ||||| |||| || |||||||| ||||||||||| ||||||||| ||||||||| | |||
Sbjct  837   GTGCGATTTTCGCTATTGGGATTCCTCATTTATCGGCTCTTGGGGTCTGGCTTG-GAGTT  895

Query  698   TCGATCATCCTCAGCCTCATCTATATCGTTGTGGCAATCGTGTTATCGGTTAAAGATGGA  757
             |||| | ||||||| ||||||||||| ||||||||||||||| ||||||||| |||||||
Sbjct  896   TCGACCTTCCTCAGTCTCATCTATATTGTTGTGGCAATCGTGCTATCGGTTAGAGATGGA  955

Query  758   GTTAAAGCACCTTCAAGAGATTATGAGATACAAGGATCATCTTTAAGCAAACTTTTTACC  817
             || ||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  956   GTAAAAACACCTTCAAGAGATTACGAGATACAAGGATCATCATTGAGCAAACTTTTTACC  1015

Query  818   ATCACTGGAGCAGCCGCAACA-CTAGTTTTCGTATTCAACACAGGAATGCTTCCAGAAAT  876
             ||||| ||||||||||||| | || ||||||| ||||||||| || ||||||||||||||
Sbjct  1016  ATCACAGGAGCAGCCGCAA-ATCTGGTTTTCGCATTCAACACCGGGATGCTTCCAGAAAT  1074

Query  877   TCAGGCAACAGTAAGGCAACCGGTTGTAAAAAACATGATGAAGGCTCTATACTTTCAATT  936
             |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  1075  TCAGGCAACAGTGAGGCAACCAGTTGTTAAAAACATGATGAAGGCTCTATACTTTCAATT  1134

Query  937   CACGGTGGGTGTTTTACCGATGTACGCGGTTGTATTCATCGGATATTGGGCTTACGGATC  996
             ||| | ||||||||||||||||||||| |||  ||||||||||||||||||||| |||||
Sbjct  1135  CACAGCGGGTGTTTTACCGATGTACGCAGTTACATTCATCGGATATTGGGCTTATGGATC  1194

Query  997   CTCAACCTCGGCTTATCTACTAAACAACGTTAATGGCCCAGTTTGGGTCAAAGCCCTTGC  1056
             |||||||||| | |||||||||||||  |||||||||||| | |||||||||||||||||
Sbjct  1195  CTCAACCTCGACCTATCTACTAAACAGTGTTAATGGCCCACTCTGGGTCAAAGCCCTTGC  1254

Query  1057  TAACATCTCCGCTATCCTTCAATCCGTTATCTCTTTGCACATTTTTGCAAGTCCAACATA  1116
             |||| |||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct  1255  TAACGTCTCTGCTATCCTTCAATCTGTTATCTCTTTGCACATATTTGCGAGTCCAACATA  1314

Query  1117  TGAGTATATGGACACAAAGTTTGGGATCAAAGGAAACCCATTGGCGTTAAAGAACTTGTT  1176
             |||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||| || |
Sbjct  1315  TGAGTACATGGACACAAAGTATGGGATCAAAGGAAACCCATTTGCGATAAAGAACCTGCT  1374

Query  1177  GTTTAGGATCATGGCAAGAGGCGGGTACATAGCGGTTAGTACGCTTCTATCAGCACTCTT  1236
             ||||||||||||||| |||||||||||||||||||| || |||||| | ||||| || ||
Sbjct  1375  GTTTAGGATCATGGCGAGAGGCGGGTACATAGCGGTAAGCACGCTTATCTCAGCGCTGTT  1434

Query  1237  ACCATTCCTTGGGGACTTCATGAGCCTCACTGGTGCAGTGAGCACATTCCCTCTCACATT  1296
              || ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1435  GCCGTTCCTCGGTGACTTCATGAGCCTAACTGGTGCAGTGAGCACATTCCCTCTCACATT  1494

Query  1297  CATTCTAGCCAACCACATGTACTATAAGGCTAAGAACAATAAGCTCAATCCTTTGCAAAA  1356
             |||||||||||||||||||||||||||||| |||||||||||||| ||| || |||||||
Sbjct  1495  CATTCTAGCCAACCACATGTACTATAAGGCAAAGAACAATAAGCTGAATGCTATGCAAAA  1554

Query  1357  GCTATGGCATTGGCTCAACGTTGTCTTCTTCAGTTTGATGTCTGTTGCTGCCGCCATTGC  1416
             ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct  1555  GCTATGGCATTGGCTTAACGTTGTCTTCTTTAGTTTGATGTCTGTTGCTGCAGCCATTGC  1614

Query  1417  AGCTCTTAGGCTCATCGCCCTTGACTCCAAGAACTTCCACGTTTTTGCAGATTTGTAATT  1476
             |||| | || ||||||||| |||| ||||| || ||||| ||||||||||||||||||||
Sbjct  1615  AGCTGTCAGACTCATCGCCGTTGATTCCAAAAATTTCCATGTTTTTGCAGATTTGTAATT  1674


> AT1G42090.1 | Symbols:  | pseudogene, similar to betaine/proline 
transporter, similar to proline transporter 1 GI:1769901 
from (Arabidopsis thaliana); blastp match of 62% identity and 
2.4e-33 P-value to GP|21069016|dbj|BAB93108.1||AB075902 betaine/proline 
transporter {Avicennia marina} | chr1:15720083-15720696 
REVERSE LENGTH=614
Length=614

 Score =  268 bits (145),  Expect = 9e-71
 Identities = 202/230 (88%), Gaps = 2/230 (1%)
 Strand=Plus/Plus

Query  245  GATTCATGGTTTCAGGCAGCGTTCGTTCTGACAACCAGTATAAACAGCGCATACGTGTTG  304
            |||||||||||||||| ||| || ||||| |||||||||||||| || || || ||||||
Sbjct  96   GATTCATGGTTTCAGGTAGCATTTGTTCTAACAACCAGTATAAAAAGTGCCTATGTGTTG  155

Query  305  GGATATTCAGGAACAGTCATGGTTCCTTTAGGATGGACTGGTGGTGTGGTTGGTCTTATT  364
            |||||||| || ||||||||||||||||| || |||| |||||||||||||||||| |||
Sbjct  156  GGATATTCTGGGACAGTCATGGTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATT  215

Query  365  CTTGCTACTGCAATCTCACTCTATGCAAACACTCTCGTAGCCAAGCTTCATGAGTTTGGT  424
            ||||||||||||||||| || || |||||||||||  | |||||||||||||||||||||
Sbjct  216  CTTGCTACTGCAATCTCCCTTTACGCAAACACTCTTATCGCCAAGCTTCATGAGTTTGGT  275

Query  425  GGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGG-TTCATTTACGGTA  473
            |||||||| |||||||| |||||||| |||| | || ||||| || ||||
Sbjct  276  GGCAAAAGACACATTCGTTATAGAGATCTCG-GAGGCTTCATCTATGGTA  324


> AT1G41890.1 | Symbols:  | pseudogene, proline transporter 2, 
similar to GB:CAA65053 from (Arabidopsis thaliana); blastp match 
of 57% identity and 6.6e-110 P-value to GP|7415521|dbj|BAA93437.1||AB022783 
amino acid permease {Oryza sativa} | chr1:15652635-15656463 
REVERSE LENGTH=3829
Length=3829

 Score = 91.6 bits (49),  Expect = 2e-17
 Identities = 63/70 (90%), Gaps = 0/70 (0%)
 Strand=Plus/Plus

Query  404   GCCAAGCTTCATGAGTTTGGTGGCAAAAGGCACATTCGCTATAGAGACCTCGCGGGGTTC  463
             ||||||||||||||||||||||||||||| |||||||| |||||||| ||||| || |||
Sbjct  2100  GCCAAGCTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTCGCAGGCTTC  2159

Query  464   ATTTACGGTA  473
             || || ||||
Sbjct  2160  ATCTATGGTA  2169



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 74648210415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5