BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482640 Length=729 Score E Sequences producing significant alignments: (Bits) Value AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15... 1050 0.0 > AT2G36620.1 | Symbols: RPL24A | ribosomal protein L24 | chr2:15350347-15351900 REVERSE LENGTH=777 Length=777 Score = 1050 bits (568), Expect = 0.0 Identities = 695/751 (93%), Gaps = 30/751 (4%) Strand=Plus/Plus Query 1 AGATTTTTTAGGGTTTCGAGTGAAAAGAGTAACAAGCGCGGCGGAGCCATGGTTCTCAAG 60 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 35 AGATTTTTTAGGGTTTCAAGTGAAAAGAGTAA-TAGCGCGGCGGAGCCATGGTTCTCAAG 93 Query 61 ACTGAGCTTTGCCGATTCAGTGGTCAGAAGATTTACCCTGGTAGAGGAATCAGATTTATC 120 ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| Sbjct 94 ACTGAGCTTTGCCGATTCAGTGGCCAGAAAATTTACCCTGGTAGAGGGATCAGATTTATC 153 Query 121 CGATCCGACTCTCAGGTGTTTTTGTTTGC-CAACTCCAAATGTAAGAGGTATTTCCACAA 179 ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 154 CGATCGGACTCTCAGGTGTTTTTGTTT-CTCAACTCCAAATGTAAGAGGTATTTCCACAA 212 Query 180 CAAGTTGAAGCCATCTAAGC-TTACATGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 238 |||||||||||||||||||| || | |||||||||||||||||||||||||||||||||| Sbjct 213 CAAGTTGAAGCCATCTAAGCTTTGC-TGGACTGCTATGTACCGAAAGCAGCACAAGAAGG 271 Query 239 ACGCAGCACAAGAGGCTGTCAAGAGAAGGAGACGTGCTACCAAGAAGCCTTACTCAAGGT 298 ||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||| Sbjct 272 ACGCAGCACAAGAGGCTGTGAAGAGAAGGAGACGTGCAACTAAGAAGCCTTACTCAAGGT 331 Query 299 CGATTGTTGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGTGCAGAGAAGCCCGAAGTTC 358 ||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 332 CGATTGTCGGTGCTACTTTGGAGGTTATTCAGAAGAAGCGAGCAGAGAAGCCTGAAGTTC 391 Query 359 GTGATGCAGCCAGAGAAGCTGCACTACGTGAGATAAAGGAGAGAATCAAGAAGACCAAGG 418 ||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 392 GTGATGCCGCTAGAGAAGCTGCCCTACGTGAGATCAAGGAGAGAATCAAGAAGACCAAGG 451 Query 419 ACGAGAAGAAGGCTAAGAAGGTCGAGTATTCTTCCAAGCAACAGAAGTCACAAGTGAAGG 478 ||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 452 ACGAGAAGAAGGCAAAGAAGGTCGAGTATGCATCAAAGCAACAGAAGTCACAAGTGAAGG 511 Query 479 GAAATATCCCCAAGAGTACTGCACCCAAGGCTGCTAAGATGGGCGGTGGTGGAGGCAGAC 538 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 512 GAAATATCCCCAAGAGTGCTGCACCCAAGGCTGCTAAGATGGGTGGTGGTGGAGGCAGAC 571 Query 539 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 572 GTTGAATGGAGCTATAGAGTAGCCCACTCTTCTCTCTTCACTTATCTTTCTTTCTTGTTT 631 Query 599 TGACAtt-tttt-tt-----AG---TTTT---G-----CACCAGATCTAATATATTCAGT 640 ||||||| |||| || || |||| | |||||||||||||||||||||| Sbjct 632 TGACATTGTTTTGTTTTGTCAGCCATTTTTTAGTTTTGCACCAGATCTAATATATTCAGT 691 Query 641 TTATGAAAACTTTTTGTTTGGTTATCAATTACCTTGTGTTTTTTACTCGTGATATCCAAA 700 |||||||||||||||||||||| |||||| ||||||||||| |||||| | ||||||| Sbjct 692 TTATGAAAACTTTTTGTTTGGT-ATCAATCCCCTTGTGTTTT--ACTCGT-AGATCCAAA 747 Query 701 AACTGC-AAATAGAATTTGT-AACTTGGCTT 729 |||||| ||||||||||| | |||||||||| Sbjct 748 AACTGCTAAATAGAATTT-TCAACTTGGCTT 777 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35364839488 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5