BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482663
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36830.1 | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma to... 1622 0.0
AT3G26520.1 | Symbols: TIP2, SITIP, GAMMA-TIP2, TIP1;2 | tonopl... 675 0.0
> AT2G36830.1 | Symbols: GAMMA-TIP, TIP1;1, GAMMA-TIP1 | gamma
tonoplast intrinsic protein | chr2:15445425-15446574 FORWARD
LENGTH=1059
Length=1059
Score = 1622 bits (878), Expect = 0.0
Identities = 985/1035 (95%), Gaps = 13/1035 (1%)
Strand=Plus/Plus
Query 1 AAAAATCATCAAATCCATCTCTCACTCTTCTAGCATCTTGACGATTAAATCTCAGCCGTC 60
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 1 AAAAATCATCAAATCCATCTCCCACTCTTCTAGCATCTTGAAGCTTAAATCTCAGCCGTC 60
Query 61 CGATCATGCCGATCAGAAACATCGCCGTTGGCCGTCCTGATGAAGCAACCCGTCCCGACG 120
|||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| |
Sbjct 61 CGATCATGCCGATCAGAAACATCGCCATTGGCCGTCCAGATGAAGCCACCCGTCCCGATG 120
Query 121 CCTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTCGTCGTCGCCGGTTCAG 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CCTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTTGTCGTCGCCGGTTCAG 180
Query 181 GCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTCTGGTCTCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTCTGGTCTCG 240
Query 241 TAGCTGCCGCACTGGCTCATGCTTTTGGACTCTTCGTCGCTGTCTCCGTTGGTGCTAACA 300
||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||| ||||
Sbjct 241 TAGCTGCTGCAGTGGCTCATGCCTTTGGACTCTTCGTCGCTGTCTCAGTTGGTGCCAACA 300
Query 301 TCTCCGGTGGACACGTTAACCCTGCCGTCACTTTCGGTGCTTTCATTGGTGGTAACATCA 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCTCTGGTGGACACGTTAACCCTGCCGTCACTTTCGGTGCTTTCATTGGTGGTAACATCA 360
Query 361 CTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTCGTCGCTTGTC 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 361 CTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTCGGCTCCGTCGTCGCTTGCC 420
Query 421 TCATCCTCAAATTCGCCACCGGTGGCTTGGCGGTGCCGGCTTTTGGTCTCTCTGCTGGGG 480
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 421 TCATCCTTAAATTCGCCACCGGTGGCTTGGCTGTGCCGGCTTTTGGTCTCTCTGCTGGAG 480
Query 481 TAGGAGTGTTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCTTGTGTACACCG 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TAGGAGTGTTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCTTGTTTACACCG 540
Query 541 TCTACGCCACCGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGCTCCCATCGCAA 600
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTACGCTACAGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGCTCCCATCGCAA 600
Query 601 TCGGTTTCATAGTTGGAGCCAACATCTTAGCCGGAGGAGCTTTCTCCGGAGCCTCCATGA 660
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 601 TCGGTTTCATTGTTGGAGCCAACATCTTAGCTGGAGGAGCTTTCTCTGGAGCCTCCATGA 660
Query 661 ATCCCGCCGTGGCTTTTGGACCAGCGGTGGTGAGCTGGACGTGGACCAACCACTGGGTCT 720
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 661 ATCCCGCCGTGGCTTTCGGACCAGCGGTGGTGAGCTGGACATGGACCAACCACTGGGTCT 720
Query 721 ACTGGGCCGGTCCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACGAAGTTTTCTTCA 780
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ACTGGGCCGGACCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACGAAGTTTTCTTCA 780
Query 781 TCAACACCACCCACGAACAGCTCCCAACCACCGATTACTGAATTAAtctctctttttctc 840
|||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 781 TCAACACCACACACGAGCAGCTCCCAACCACAGACTACTGAATTAATCTCTCTTTTTCTC 840
Query 841 tcttgtgtaattttattcgtctttgaatttgaatttcaatgtctttttaatttcCGTTTG 900
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 841 TCTTGTGTAATTTTATTCGACTTTGAATTTGAATTTTAATGTCTTTTTAATTTCCGTTTG 900
Query 901 TGTAATTTCGAATCATCAAGGGGTTTATGATCGTTGGATCTTTTAGATGAATCCTCGTCC 960
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 901 TGTAATTTCGAATCATCAAGGGGTTTATGATCGTTCGATCTTTTAGATGAATCCTTGTCC 960
Query 961 GTTGGTTTCAAGAGTGG---T--CA-TTT--A-TA-AT---GTGAATTATGTATCTATCT 1007
||||||||||||||||| | || ||| | || || |||||||||||||| ||||
Sbjct 961 GTTGGTTTCAAGAGTGGCCATTGCAATTTCGACTATATAATGTGAATTATGTATCAATCT 1020
Query 1008 CATCTTAAGTTTTCA 1022
|||||||||||||||
Sbjct 1021 CATCTTAAGTTTTCA 1035
> AT3G26520.1 | Symbols: TIP2, SITIP, GAMMA-TIP2, TIP1;2 | tonoplast
intrinsic protein 2 | chr3:9722443-9723815 REVERSE LENGTH=1201
Length=1201
Score = 675 bits (365), Expect = 0.0
Identities = 644/778 (83%), Gaps = 22/778 (3%)
Strand=Plus/Plus
Query 59 TCCGATCATGCCGATCAGAAACATCGCCGTT-G-GCCGTCC-TGATGAAG-C-AACCCGT 113
|||||||||||||| ||||||||||||| || | | |||| || || | | | | |
Sbjct 106 TCCGATCATGCCGACCAGAAACATCGCCATTGGTGGAGTCCAAGAAGAGGTCTATCAC-- 163
Query 114 CCCGACGC-CTTAAAGGCGGCGTTGGCTGAGTTCATTTCAACTTTGATCTTCGTCGTCGC 172
||| |||| ||| | ||||||| | |||||||| || || ||||||||||||||| ||||
Sbjct 164 CCCAACGCACTT-AGGGCGGCGCTCGCTGAGTTTATCTCGACTTTGATCTTCGTCTTCGC 222
Query 173 CGGTTCAGGCTCTGGCATGGCTTTCAACAAGCTCACTGAAAACGGAGCCACCACTCCTTC 232
||| |||||||| || || |||||||||||| ||||||| || ||||| |||||||||||
Sbjct 223 CGGCTCAGGCTCCGGAATTGCTTTCAACAAGATCACTGACAATGGAGCAACCACTCCTTC 282
Query 233 TGGTCTCGTAGCTGCCGCAC-TGGCTCATGCTTTTGGACTCTTCGTCGCTGTCTCCGTTG 291
|| ||||| || || || | | ||||||||||| || ||||| ||||||||||| ||||
Sbjct 283 CGGCCTCGTCGCCGCTGC-CTTAGCTCATGCTTTCGGTCTCTTTGTCGCTGTCTCTGTTG 341
Query 292 GTGCTAACATCTCCGGTGGACACGTTAACCCTGCCGTCACTTTCGGTG-CTTTCATTGGT 350
| |||||||| |||||||| ||||||||||||||||| || ||||||| ||| | | |||
Sbjct 342 GCGCTAACATTTCCGGTGGCCACGTTAACCCTGCCGTTACCTTCGGTGTCTTAC-TCGGT 400
Query 351 GGTAACATCACTCTCCTCCGTGGTATCCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTC 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 401 GGTAACATCACTCTCCTCCGTGGTATTCTCTACTGGATTGCTCAGCTTCTTGGCTCCGTC 460
Query 411 GTCGCTTGTCTCATCCTCAAATTCGCCACCGGTGGCTTGGCGGTGCCGGCTTTTGGTCTC 470
| ||||||| || |||| | || |||||||||||| | | | || || || ||||||
Sbjct 461 GCCGCTTGTTTCCTCCTTAGCTTTGCCACCGGTGGCGAGCCAATTCCAGCGTTCGGTCTC 520
Query 471 TCTGCTGGGGTAGGAGTG-TTGAACGCTTTCGTTTTCGAGATCGTGATGACATTCGGGCT 529
||||| || || ||| | || |||||| |||| ||||||||||||||||| ||||||||
Sbjct 521 TCTGCCGGAGTCGGA-TCATTAAACGCTCTCGTCTTCGAGATCGTGATGACCTTCGGGCT 579
Query 530 TGTGTACACCGTCTACGCCACCGCCATTGACCCCAAAAACGGGAGTCTTGGAACAATTGC 589
|| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||| ||
Sbjct 580 CGTCTACACCGTCTACGCCACAGCCGTTGACCCCAAGAACGGTAGTCTCGGAACAATCGC 639
Query 590 TCCCATCGCAATCGGTTTCATAGTTGGAGCCAACATCTTAGCCGGAGGAGCTTTCTCCGG 649
|| ||||| || |||||||| |||||||| |||||| | ||||| ||||||||| |||
Sbjct 640 ACCAATCGCCATAGGTTTCATCGTTGGAGCTAACATCCTCGCCGGTGGAGCTTTCAGCGG 699
Query 650 AGCCTCCATGAATCCC-GCCGTGGCTTTTGGACCAGCGGTGGTGAGCTGGACGTGGACCA 708
||| |||||||| ||| ||||| ||||| |||||||| || || ||||||||||||||||
Sbjct 700 AGCTTCCATGAA-CCCAGCCGTTGCTTTCGGACCAGCCGTCGTAAGCTGGACGTGGACCA 758
Query 709 ACCACTGGGTCTACTGGGCCGGTCCTCTCGTCGGCGGTGGAATCGCTGGACTCATCTACG 768
|||||||||| |||||||| |||||||| | || |||||| |||| ||| | |||||||
Sbjct 759 ACCACTGGGTTTACTGGGCTGGTCCTCTTATTGGTGGTGGACTCGCCGGAATTATCTACG 818
Query 769 AAGTTT-TCTTCATCAAC-ACCA--CCCACGAACAGCTCCCAACCACCGATTACTGAA 822
| ||| |||||||| | | | ||||||| || | || ||||||||||||||||
Sbjct 819 AC-TTTGTCTTCATCGATGAAAATGCCCACGAGCAATTGCCTACCACCGATTACTGAA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5