BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482682
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymer... 3055 0.0
> AT2G36990.1 | Symbols: SIGF, SIG6, ATSIG6, SOLDAT8 | RNApolymerase
sigma-subunit F | chr2:15537258-15540139 REVERSE LENGTH=2011
Length=2011
Score = 3055 bits (1654), Expect = 0.0
Identities = 1884/1991 (95%), Gaps = 31/1991 (2%)
Strand=Plus/Plus
Query 1 GTGTGTCGCCTTATCTGTTCGTCATGGCTCTGTAGAGTAGCCTCATGTTCTTATTCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTGTGTCGCCTTATCTGTTCGTCATGGCTCTGTAGAGTAGCCTCATGTTCTTATTCTTCT 62
Query 61 TCTTCCTTAGCCATTCGTGGAAGCAAAAACAGAGTCTTTT-TTACTTTGGTGATTCTGTG 119
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 63 TCTTCCTTAGCCATTCGTGGAAGCAAAAACAGAGTCTTTTATT-CTTTGGTGATTCTGTG 121
Query 120 AAATGGAAGCTACGAGGAACTTGGTTTCTTCGTCTCCTTCGTTTCAGACAAAGACCCATC 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 122 AAATGGAAGCTACGAGGAACTTGGTTTCTTCATCTCCTTCGTTTCAGACAAAGACTCATC 181
Query 180 TC-A-AG-AGCTACTCTTCTCCTTCCTCAGTAGTGATGCTTCATGAGCAAACAACAACTC 236
|| | || |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 182 TCAAGAGCAGCTACTCTTCTCCTTCCTCTGTAGTGATGCTTCATGATCAAACAACAACTC 241
Query 237 CTGTAGTTAACTCACGTCATCTCAATTCTCTATCTCGACATTTTCCTGCGTCGGTTCTCT 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CTGTTGTTAACTCACGTCATCTCAATTCTCTATCTCGACATTTTCCTGCGTCGGTTCTCT 301
Query 297 CACAGGAGCCACGGGAAGAGTCTAGGCCTTTGTCACATGCGTTAAGGGAAGACAGAACAT 356
||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||
Sbjct 302 CACAGGAGCCACGGGAAGAGTCTAGGCCTCTGTCACATGCGTTAAGAGACGATAGAACAT 361
Query 357 CCCAGTTGACTCTGGAGAGGAGGCAGTTTGATGAATTGGTTTCATCTCGAGAAGATGAGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 CCCAGTTGACTCTGGAGAGGAGGCAGTTTGATGAATTGGTTTCATCTCGAGAAGATGAGA 421
Query 417 AATTTGAACAGCAACTTCTTCACTCTGCTGGTTTATGGAATTTATTGATATCTCCTTTAA 476
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 422 AATTTGAACAGCAACTTCTTCACTCTACTGGTTTATGGAATTTATTAATATCTCCTTTAA 481
Query 477 CAGCTGAAACGAAATTGCCGCCAGTTGTACCGCCCTTAGCAGATGCAGAGCTTTGTGATA 536
|| ||||||||||||||||| ||||||| | || ||||| ||||||||||||||||||
Sbjct 482 CATCTGAAACGAAATTGCCGGCAGTTGTGTCTCCTTTAGCTGATGCAGAGCTTTGTGATG 541
Query 537 TTGTTGCACTAGCTCAGAAGGCTTTATCAGCTTCAAAACAAGCTGCATTGTTAGCTGACG 596
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 542 TGGTTGCACTAGCTCAGAAGGCTTTATCAGCTTCAAAACAAGCTGCATTGTTAGTTGATG 601
Query 597 ACACTGAAGCTAATCCATCTGACAACACCAGGGGTTCTCTCTCCACTAGCTCTTCTATGT 656
|||||||||| |||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 602 ACACTGAAGCAAATCCATCTGACAACATCAAGGATTCTCTCTCCACTAGCTCTTCTATGT 661
Query 657 CCTTACCGGAAAAGGGAGCCATAGTAAGATCGAAGCGGCAGCTGGAGAGACGAGCAAAGA 716
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 662 CCTTACCGGAAAAGGGAAACATAGTAAGATCGAAGCGGCAGCTAGAGAGACGAGCAAAGA 721
Query 717 ACAGACGGGCTCCTAAATCAAACGATGTGGACAATGAGGGTTATGTTCCTCAGAAAATTA 776
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 722 ACAGACGGGCTCCAAAATCAAACGATGTGGACGATGAGGGTTATGTTCCTCAGAAAACTA 781
Query 777 ATGCCAAGAAAAAGTTTAAACAAGGGGTTGATACTGATGATGCGCTTCAGCTCTTCTTGT 836
||| |||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 782 GTGCGAAGAAAAAGTATAAACAAGGGGCTGATAATGATGATGCGCTTCAGCTCTTCTTGT 841
Query 837 GGGGACCTGAGACAAAACAACTTCTGACTGCTAAAGAGGAAGCTGAGCTGATATCACATA 896
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 842 GGGGACCTGAGACAAAACAACTTCTGACTGCTAAAGAAGAAGCTGAGCTGATATCACATA 901
Query 897 TACAGCATTTATTAAAGTTGGAGAAGGTAAAGACTAAACTTGAATCTCAAAACGGCTGCG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TACAGCATTTATTAAAGTTGGAGAAGGTAAAGACTAAACTTGAATCTCAAAACGGCTGCG 961
Query 957 AACCAACAATAGGCGAGTGGGCTGAAGCTATGGGGATAAGTTCCCCTGTCTTAAAATCTG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AACCAACAATAGGCGAGTGGGCTGAAGCTATGGGGATAAGTTCCCCTGTCTTAAAATCTG 1021
Query 1017 AAATCCACCGTGGTAGAAGCAGCCGGGAAAAGTTGATTACAGCAAACCTACGTCTGGTAG 1076
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 ATATCCACCGTGGGAGAAGCAGCCGGGAAAAGTTGATTACAGCAAACCTACGTCTGGTAG 1081
Query 1077 TCCATATAGCTAAACAATATCAGAATCGTGGGCTCAACTTTCAGGACTTATTGCAGGAAG 1136
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1082 TCCATATAGCTAAACAATATCAGAATCGTGGACTCAACTTTCAGGACTTATTGCAGGAAG 1141
Query 1137 GAAGCATGGGGCTAATGAAAAGTGTAGAGAAGTTCAAACCGCAATCTGGATGCAGATTTG 1196
|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| |
Sbjct 1142 GAAGCATGGGGCTAATGAAAAGTGTAGAAAAATTCAAACCGCAATCCGGATGCAGATTCG 1201
Query 1197 CTACTTACGCCTACTGGTGGATTCGACAATCCATAAGAAAGTCTATATTTCAAAACTCCA 1256
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 CTACTTACGCTTACTGGTGGATTCGACAATCCATAAGAAAGTCTATATTTCAAAACTCCA 1261
Query 1257 GAACAATCCGTTTACCGGAGAACGTATACATGCTACTTGGAAAAGTATCCGAAGCCAGGA 1316
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1262 GAACAATCCGTTTACCGGAGAACGTATACATGCTACTAGGCAAAGTATCCGAAGCCAGAA 1321
Query 1317 AAACGTGCGTGCAGGAAGGAAACTACCGTCCAAGTAAAGAGCAACTAGCAGGCCACGTTG 1376
|||| |||||||||||||| || ||||| |||||||||||| |||| || ||||||||||
Sbjct 1322 AAACTTGCGTGCAGGAAGGGAATTACCGACCAAGTAAAGAGGAACTCGCTGGCCACGTTG 1381
Query 1377 GGGTTTCAACAGAGAAGCTGGATAAACTGCTGTACAATACAAGAACACCTCTTTCAATGC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 GGGTTTCAACAGAGAAGCTGGATAAACTGCTGTACAATACAAGAACACCTCTTTCAATGC 1441
Query 1437 AACAACCCATTTGGTCTGATCAAGACACCACCTTTCAGGAAATAACACCAGACAGTGGGA 1496
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AACAGCCCATTTGGTCTGATCAAGACACCACCTTTCAGGAAATAACACCAGACAGTGGGA 1501
Query 1497 TTGAGACACCAACGATGAGCGTGGGGAAGCAGATGATGAGGAACCATGTACGGAATCTCC 1556
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1502 TTGAGACACCAACAATGAGCGTGGGGAAGCAGCTGATGAGGAACCATGTACGGAATCTCC 1561
Query 1557 TAAATGTACTGAGCCCAAAGGAGAGAAGGATCATCAAGCTGAGATTTGGGATTGATGGCG 1616
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TCAATGTACTGAGTCCAAAGGAGAGAAGGATCATCAAGCTGAGATTTGGGATTGATGGCG 1621
Query 1617 GTAAACAGAGATCGTTATCAGAAATAGGAGAGATTTACGGACTGTCGAAGGAGAGGGTAA 1676
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1622 GTAAACAGAGATCGTTATCGGAAATAGGAGAGATTTACGGATTGTCAAAGGAGAGGGTAA 1681
Query 1677 GGCAGTTAGAGAGCCGGGCATTGTACAGGCTTAAGCAGAACATGAACAGCCATGGACTCC 1736
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1682 GGCAGCTAGAGAGCCGGGCATTGTACAGGCTTAAGCAGAACATGAACAGCCATGGACTTC 1741
Query 1737 ATGCTTATGCTGATTTGCTTGTCTAGCTCATGGAGATATTGGTTTCTTCTATTAATAATG 1796
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1742 ATGCTTATGCTGATTTGCTTGTCTAGCTCATGGAGATATTGGTTTCTTCTATTA-TAATG 1800
Query 1797 GTATGTGTATACAAAATATACTTTTGTTGATATTCTGAGGAATAGTGTTTTCTTGGATAA 1856
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1801 --ATGTGTATACAAAATATACTTTTGTTGATATTATGAGGAATAGTGTTT-CTTGGATAA 1857
Query 1857 GAGTTTTG--G----------GT--A-------A-TTAAGGAAAAAGAGGGATTACCACA 1894
|||||||| | || | | |||||||||||||||||||||||||
Sbjct 1858 GAGTTTTGCCGTTAAAACTTTGTTTATTGTGGTAGTTAAGGAAAAAGAGGGATTACCACA 1917
Query 1895 CTTTGATAATTTGTTTATTTCTGATTGATGTGTAATTGTGCATATCTGTTTTACTTCTTT 1954
||| ||||||||||||| |||| || |||| |||||||||||||||||||| |||||
Sbjct 1918 TTTTCATAATTTGTTTATCTCTGCTTTCTGTGCAATTGTGCATATCTGTTTTAGTTCTTG 1977
Query 1955 TAATCAAATTT 1965
|||||||||||
Sbjct 1978 TAATCAAATTT 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97338856755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5