BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482707
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsi... 1404 0.0
AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like sup... 1234 0.0
AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane in... 839 0.0
> AT2G37170.1 | Symbols: PIP2B, PIP2;2 | plasma membrane intrinsic
protein 2 | chr2:15613402-15614857 REVERSE LENGTH=1146
Length=1146
Score = 1404 bits (760), Expect = 0.0
Identities = 931/1011 (92%), Gaps = 21/1011 (2%)
Strand=Plus/Plus
Query 1 ACAAAACACAACTTTC--ATA-AAC--AAAAAG-TATAGAAATGGCGAAAGACGTGGAAG 54
|||||||||||||||| ||| ||| |||||| |||||||||||| |||||||||||||
Sbjct 26 ACAAAACACAACTTTCATATATAACAAAAAAAGTTATAGAAATGGCCAAAGACGTGGAAG 85
Query 55 GACCTGAGGGGTTTCAGACGAGGGACTACGAGGATCCGCCACCAACACCGTTTTTCGACG 114
|||||||||| |||||||| || |||||||| |||||||||||||| ||||||||||| |
Sbjct 86 GACCTGAGGGATTTCAGACAAGAGACTACGAAGATCCGCCACCAACTCCGTTTTTCGATG 145
Query 115 CGGAGGAGCTTACGAAGTGGTCTTTATACAGAGCAGTCATCGCTGAGTTCGTAGCTACTC 174
|||| |||||||| |||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 146 CGGACGAGCTTACCAAGTGGTCTTTATACAGAGCCGTCATTGCCGAGTTCGTAGCCACTC 205
Query 175 TCCTCTTCTTGTACGTCACCGTTTTGACTGTTATCGGTTACAAGATTCAGTCTGACA-AA 233
|||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||| ||
Sbjct 206 TCCTCTTCTTGTACATCACCGTTTTAACTGTCATCGGTTACAAGATTCAGTCCGACACAA 265
Query 234 ACCGCCGGTGGAGTTGACTGTGGCGGCGTTGGAATCCTCGGTATCGCGTGGGCTTTTGGT 293
| ||||||||||||||||| |||||||| |||||||| || ||||||||||||||||||
Sbjct 266 A-AGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGGCATCGCGTGGGCTTTTGGT 324
Query 294 GGCATGATCTTCATTCTTGTCTACTGCACCGCTGGTATCTCAGGTGGTCACATAAACCCG 353
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 325 GGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTCAGGTGGTCACATAAACCCT 384
Query 354 GCGGTGACGTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCTGATTAGGGCGGTGCTTTAC 413
||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 385 GCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCTGATTAGGGCGGTGCTTTAC 444
Query 414 ATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTT-GTGAAGGCTTTTCAAAG 472
|||||||||||||||||||||||||||||||||||||| ||| || || || ||||||||
Sbjct 445 ATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGG-TTTCGTCAAAGCCTTTCAAAG 503
Query 473 CTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCGACGGTTACAACACTGG 532
||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 504 CTCTTACTATGATCGTTACGGTGGAGGAGCCAACTCTCTAGCAGACGGCTACAACACAGG 563
Query 533 CACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCTACACAGTCTTCTCCGC 592
||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 564 CACCGGACTAGCCGCAGAGATCATTGGAACATTCGTTCTCGTCTACACAGTCTTCTCCGC 623
Query 593 CACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCGAT 652
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 624 TACTGATCCCAAACGTAACGCTAGAGACTCCCACGTTCCGGTTTTGGCGCCACTTCCGAT 683
Query 653 TGGGTTTGCTGTGTTTATGGTACATTTGGCAACAATTCCGATCACCGGAACCGGTATCAA 712
||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 684 TGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGATCACCGGAACCGGCATCAA 743
Query 713 CCCGGCTAGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGAGCAAGCCATGGGATGACC 771
|||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 744 CCCGGCTAGGAG-TTTCGGAGCTGCCGTAATCTATAACAAGAGCAAGCCATGGGATGACC 802
Query 772 ACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCAATAGCTGCATTTTATCACCAAT 831
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 803 ACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCGATAGCTGCATTTTATCACCAAT 862
Query 832 TTGTCCTCAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCAGAAGTGCAGCCAACGTCT 891
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 863 TTGTCCTAAGGGCTTCAGGTTCCAAGTCACTTGGATCCTTCAGAAGTGCAGCCAACGTTT 922
Query 892 GAGTTTAAGCCACA-AAAACAATA---ATCATAATAACAACAATTATAAAATGCTTGTGT 947
|||||| |||||| |||| || | ||||||||||||||||||| |||||| ||||||
Sbjct 923 GAGTTTTTGCCACACAAAAAAAAACCTATCATAATAACAACAATTACAAAATGGTTGTGT 982
Query 948 TATTATGTATGTATGTACAAAAAATTGGCAACTTTGCTTGTAAAACTATGC 998
||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 983 TATTATGTATGTA----CAAAAA-TTGGCAACTTTGCTTGTAAAACTATGC 1028
> AT2G37180.1 | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like superfamily
protein | chr2:15617708-15619155 FORWARD LENGTH=1147
Length=1147
Score = 1234 bits (668), Expect = 0.0
Identities = 807/875 (92%), Gaps = 5/875 (1%)
Strand=Plus/Plus
Query 36 ATGGCGAAAGACGTGGAAGGACCTGAGGGGTTTCAGACGAGGGACTACGAGGATCCGCCA 95
||||| |||||||||||||||||||| || ||||||||||| || ||||| ||||| ||
Sbjct 72 ATGGCTAAAGACGTGGAAGGACCTGATGGATTTCAGACGAGAGATTACGAAGATCCTCCG 131
Query 96 CCAACACCGTTTTTCGACGCGGAGGAGCTTACGAAGTGGTCTTTATACAGAGCAGTCATC 155
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 132 CCAACACCGTTTTTCGACGCAGAGGAGCTTACCAAGTGGTCTTTATACAGAGCAGTCATC 191
Query 156 GCTGAGTTCGTAGCTACTCTCCTCTTCTTGTACGTCACCGTTTTGACTGTTATCGGTTAC 215
|| ||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 192 GCCGAGTTCGTAGCCACTCTCCTCTTCTTGTACGTCACCGTTTTAACTGTCATTGGTTAC 251
Query 216 AAGATTCAGTCTGACA-AAACCGCCGGTGGAGTTGACTGTGGCGGCGTTGGAATCCTCGG 274
||||||||||| |||| ||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 252 AAGATTCAGTCCGACACAAA-AGCCGGTGGAGTTGACTGCGGCGGCGTCGGAATCCTTGG 310
Query 275 TATCGCGTGGGCTTTTGGTGGCATGATCTTCATTCTTGTCTACTGCACCGCTGGTATCTC 334
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 311 CATCGCGTGGGCTTTTGGTGGCATGATCTTCATCCTTGTCTACTGCACCGCCGGTATCTC 370
Query 335 AGGTGGTCACATAAACCCGGCGGTGACGTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCT 394
|||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 371 AGGTGGTCACATAAACCCTGCGGTGACGTTTGGTTTGTTCTTAGCCCGGAAGGTATCGCT 430
Query 395 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GATTAGGGCGGTGCTTTACATGGTGGCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTT 490
Query 455 TGTGAAGGCTTTTCAAAGCTCTTACTACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGC 514
||||||||| |||||||||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct 491 TGTGAAGGCATTTCAAAGCTCTCACTATGTTAATTACGGTGGAGGAGCCAACTTTCTAGC 550
Query 515 CGACGGTTACAACACTGGCACGGGACTTGCCGCAGAGATCATCGGAACATTCGTGCTCGT 574
||||| ||||| || ||||| ||||| || |||||||||||||||||||||||||| ||
Sbjct 551 TGACGGCTACAATACAGGCACCGGACTCGCGGCAGAGATCATCGGAACATTCGTGCTTGT 610
Query 575 CTACACAGTCTTCTCCGCCACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 634
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CTACACAGTCTTCTCCGCTACTGATCCCAAACGCAACGCTAGAGACTCCCACGTTCCGGT 670
Query 635 GTTGGCGCCACTTCCGATTGGGTTTGCTGTGTTTATGGTACATTTGGCAACAATTCCGAT 694
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 671 TTTGGCGCCACTTCCGATTGGGTTTGCGGTGTTTATGGTACATTTGGCCACTATTCCGAT 730
Query 695 CACCGGAACCGGTATCAACCCGGCTAGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGA 753
|||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||
Sbjct 731 CACCGGAACCGGTATCAACCCGGCTAGGAG-TTTCGGAGCCGCCGTAATCTTTAACAAGA 789
Query 754 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTGCAATAG 813
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 790 GCAAGCCATGGGATGACCACTGGATATTCTGGGTGGGACCATTCATTGGAGCTACGATAG 849
Query 814 CTGCATTTTATCACCAATTTGTCCTCAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCA 873
||||||||||||||||||| || || ||||| ||||| |||||||| ||||| || ||||
Sbjct 850 CTGCATTTTATCACCAATTCGTTCTAAGGGCCTCAGGCTCCAAGTCCCTCGGTTCATTCA 909
Query 874 GAAGTGCAGCCAACGTCTGAGTTTAAGCCACAAAA 908
|||||||||||||||| | | ||| ||||| |||
Sbjct 910 GAAGTGCAGCCAACGTTTAAACTTA-GCCACGAAA 943
> AT3G53420.1 | Symbols: PIP2A, PIP2, PIP2;1 | plasma membrane
intrinsic protein 2A | chr3:19803655-19805713 REVERSE LENGTH=1374
Length=1374
Score = 839 bits (454), Expect = 0.0
Identities = 709/833 (85%), Gaps = 14/833 (2%)
Strand=Plus/Plus
Query 66 TTTCAGACGAGGGACTA-CGAGGATCCGCCACCAACACCGTTT-TTCGACGCG-GAGGAG 122
|||||||| || ||||| | | |||||||||||| | |||||| || || | | | ||||
Sbjct 296 TTTCAGACAAGAGACTATC-AAGATCCGCCACCAGCTCCGTTTATT-GATG-GAGCGGAG 352
Query 123 CTTACGAAGTGGTCTTTATACAGAGCAGTCATCGCTGAGTTCGTAGCTACTCTCCTCTTC 182
|| | |||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 353 CTAAAGAAGTGGTCTTTCTACAGAGCAGTTATCGCAGAGTTCGTAGCCACTCTCCTCTTC 412
Query 183 TTGTACGTCACCGTTTTGACTGTTATCGGTTACAAGATTCAGTCTGACA-AAACCGCCGG 241
|| ||| ||||||||||||| || |||||||||||||||||||| || | | |||||
Sbjct 413 TTATACATCACCGTTTTGACAGTCATCGGTTACAAGATTCAGTCCGATACTGA-TGCCGG 471
Query 242 TGGAGTTGACTGTGGCGGCGTTGGAATCCTCGGTATCGCGTGGGCTTTTGGTGGCATGAT 301
||| || || || ||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct 472 TGGCGTAGATTGCGGCGGAGTTGGAATCCTCGGTATCGCTTGGGCCTTTGGTGGTATGAT 531
Query 302 CTTCATTCTTGTCTACTGCACCGCTGGTATCTCAGGTGGTCACATAAACCCGGCGGTGAC 361
|||||| || |||||||||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 532 CTTCATCCTCGTCTACTGCACCGCCGGTATCTCTGGTGGTCACATTAACCCAGCGGTGAC 591
Query 362 GTTTGGTTTGTTCTTGGCACGGAAGGTGTCGCTGA-TTAGGGCGGTGCTT-TACATGGTG 419
||||| | ||||||||||| || |||||| | | |||||| | || ||||| |
Sbjct 592 ATTTGGGCTATTCTTGGCACGTAAAGTGTCG-TTACCTAGGGCCCT-ATTGTACATAATC 649
Query 420 GCTCAGTGTTTGGGTGCTATTTGTGGAGTTGGGTTTGTGAAGGCTTTTCAAAGCTCTTAC 479
||||||||||||||||| |||||||||||||| ||||| || || || ||||||||||||
Sbjct 650 GCTCAGTGTTTGGGTGCGATTTGTGGAGTTGGTTTTGTCAAAGCCTTCCAAAGCTCTTAC 709
Query 480 TACGTTCGTTACGGTGGAGGAGCCAACTCTCTAGCCGACGGTTACAACACTGGCACGGGA 539
||| |||||||| || |||||||||||||||||||| || |||| ||| || || ||
Sbjct 710 TACACCCGTTACGGAGGTGGAGCCAACTCTCTAGCCGATGGCTACAGCACAGGGACCGGT 769
Query 540 CTTGCCGCAGAGATCATCGGAACATTCGTGCTCGTCTACACAGTCTTCTCCGCCACTGAT 599
|| |||||||||||||| || || ||||| || |||||||| |||||||| ||||||||
Sbjct 770 CTAGCCGCAGAGATCATTGGTACTTTCGTTCTTGTCTACACCGTCTTCTCTGCCACTGAC 829
Query 600 CCCAAACGCAACGCTAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCGATTGGGTTT 659
|||||||| | || ||||||||||||||||||||||||||||||||||| || || |||
Sbjct 830 CCCAAACGTAGTGCCAGAGACTCCCACGTTCCGGTGTTGGCGCCACTTCCAATCGGATTT 889
Query 660 GCTGTGTTTATGGTACATTTGGCAACAATTCCGATCACCGGAACCGGTATCAACCCGGCT 719
|| ||||| |||||||||||||| || ||||| || ||||||||||| || ||||||||
Sbjct 890 GCCGTGTTCATGGTACATTTGGCTACCATTCCCATTACCGGAACCGGAATTAACCCGGCA 949
Query 720 AGGAGCTTT-GGAGCTGCCGTAATCTTTAACGAGAGCAAGCCATGGGATGACCACTGGAT 778
||||| ||| |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 950 AGGAG-TTTCGGAGCTGCCGTAATCTACAACAAGAGCAAGCCATGGGATGACCACTGGAT 1008
Query 779 ATTCTGGGTGGGACCATTCATTGGAGCTGCAATAGCTGCATTTTATCACCAATTTGTCCT 838
||| ||||| |||||||||||||||||||| ||||||||||| || |||||||| || ||
Sbjct 1009 ATTTTGGGTTGGACCATTCATTGGAGCTGCGATAGCTGCATTCTACCACCAATTCGTTCT 1068
Query 839 CAGGGCTTCAGGTTCCAAGTCACTCGGATCCTTCAGAAGTGCAGCCAACGTCT 891
|| ||||||||||| ||||| || ||||| ||||||||||| ||||||||||
Sbjct 1069 GAGAGCTTCAGGTTCTAAGTCTCTTGGATCATTCAGAAGTGCTGCCAACGTCT 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5