BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482716
Length=994
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37240.1 | Symbols: | Thioredoxin superfamily protein | chr... 1282 0.0
> AT2G37240.1 | Symbols: | Thioredoxin superfamily protein | chr2:15639939-15641763
REVERSE LENGTH=1086
Length=1086
Score = 1282 bits (694), Expect = 0.0
Identities = 904/1001 (90%), Gaps = 32/1001 (3%)
Strand=Plus/Plus
Query 17 TGGAAGCAACAATGGCGGTTTCTCTGTCGTCGTCGACGACGATAACGCCCATAACTCTGC 76
||||||||||||||||| || |||| ||||||||| ||||||| ||| |||| |||||||
Sbjct 33 TGGAAGCAACAATGGCGATTGCTCTCTCGTCGTCGTCGACGATCACGTCCATTACTCTGC 92
Query 77 AGCCGAATCTGAAGACGATTCATGGATTAGGGACAGTATC-TCCTTTTTATTCGATCAAA 135
||||||| |||||||||||||||||||||||||||||| | |||| ||||||| |||||
Sbjct 93 AGCCGAAGCTGAAGACGATTCATGGATTAGGGACAGTA-CTTCCTGGTTATTCGGTCAAA 151
Query 136 TCTCGCTTTCGTAGTGTCTCTCTCCGACGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 195
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 152 TCTCACTTTCGTAGTGTCTCTCTCCGGCGTAGCGCCGTGGTCGTGTCGGCCATTACCGGA 211
Query 196 GGAGCTTCAGGAACTGGAATTGGGAAAGATACTGCTGCTTTGTTAGATACAGTGAAAATT 255
| |||| ||| ||||||| ||||||| ||| |||| || | ||||||||||| ||| |
Sbjct 212 GCTTCTTCCGGAGCTGGAATAGGGAAAGGTACAGCTGATTCGCTAGATACAGTG-AAAGT 270
Query 256 C-TGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCTGT 314
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 271 CTTGGATTTGAGAGGAAATGAGATTCCGATTTCTGATTTATGGAAAGATAGGAAGGCCGT 330
Query 315 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TGTTGCATTTGCTCGTCATTTTGGATGTGTGCTCTGTCGGAAACGAGCAGCTTATCTTGC 390
Query 375 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTTATTGGACCGGGAAG 434
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 391 AGAAAAGAAGGATGTGATGGATGCATCTGGTGTTGCTCTTGTTCTGATCGGACCGGGAAG 450
Query 435 TATTGATCAGGCTAACACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCAGA 494
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 451 CATCGATCAGGCTAATACTTTTGTGGAACAGACTAAGTTTAAAGGAGAGGTCTATGCGGA 510
Query 495 TCCAAACCACGCATCATACGAGGCGCTTGAATTTGTTTCAGGGGTTACTGTGACATTTAC 554
|||||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||
Sbjct 511 TCCAAACCACGCATCATACGAGGCGCTTGAGTTCGTTTCAGGGGTTTCTGTTACATTTAC 570
Query 555 CCCCAAAGCCGCTCTGAAGATATTGGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 614
|||||||| ||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 571 ACCCAAAGCTGCTATGAAGATACTAGAGTCTTACATGGAAGGATACCGCCAAGACTGGAA 630
Query 615 ACTCTCGTTTATGAAAGATACAGTAGAAAGAGGCGGCTGGCAACAAGGCGGAATCCTAGT 674
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 631 ACTCTCGTTTATGAAAGATACAGTTGAAAGAGGCGGCTGGCAACAAGGCGGAATCTTAGT 690
Query 675 TGCTGGCCCTGGAAAAGATAACATCTCTTACATACGCAAGGACAAAGAAGCTGGTGATGA 734
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 691 TGCTGGCCCTGGGAAAGATAACATCTCTTATATACGCAAGGACAAAGAAGCCGGTGATGA 750
Query 735 CCCGCCTGTTGAAGAGATCCTAAAAGCGTGTTGCGCTTGAAG-G---AA----TCGCAAT 786
||||||||||||||||||||| ||||||||||| |||||||| | || |||||||
Sbjct 751 CCCGCCTGTTGAAGAGATCCTTAAAGCGTGTTGTGCTTGAAGAGTTGAAAGAATCGCAAT 810
Query 787 CGAAAAGTAGAT-TTTAAAAAACAGTAAC-ACTGTGCTTTGCCCGG-TACTCATCTTAAA 843
|||||| ||||| |||||||||||||||| || |||| ||||||| |||||| || |||
Sbjct 811 CGAAAAATAGATATTTAAAAAACAGTAACGACACTGCTATGCCCGGATACTCAACT-AAA 869
Query 844 TCCATAAAACACCATTACCATAACCATAACGACCACATTAGATAAATATGTACGTAGGGA 903
|||||||||||||||||||| || || |||||||||||| |||| ||| | |||||||
Sbjct 870 TCCATAAAACACCATTACCACAATCACAACGACCACATTTGATATATA-G---GTAGGGA 925
Query 904 AAGAAAAAA-GACAAGTGGTAGACCGAAAAATAAAAAG-AT-GCCTTCTTGATTTTTGAT 960
||||||||| ||||||| ||||||||||| ||| | || | |||||||||||||||
Sbjct 926 AAGAAAAAAAGACAAGTCGTAGACCGAAAG-TAATGATCATTGT-TTCTTGATTTTTGAT 983
Query 961 GATCATTATGA-----G--TCGAGATCAGCCAAGGATAAGT 994
||||||||||| | ||||||||||| ||||||||||
Sbjct 984 GATCATTATGACTTATGAGTCGAGATCAGCGAAGGATAAGT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48676888443
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5