BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482747
Length=2846
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37520.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/... 2872 0.0
AT3G53680.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/... 1596 0.0
AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORW... 52.8 2e-05
> AT2G37520.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type
zinc finger domain | chr2:15744769-15750107
REVERSE LENGTH=3246
Length=3246
Score = 2872 bits (1555), Expect = 0.0
Identities = 1678/1737 (97%), Gaps = 9/1737 (1%)
Strand=Plus/Plus
Query 1097 TGGCCCTGGTCTTGATGAAAGTCAGAGCCTTACTCCATGCTCTGTGGAGAACCATTATTT 1156
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1425 TGGTCCTGGTCTTGATGAGAGTCAGAGCCTTACTCCATGCTCTGTGGAGAACCATTATTT 1484
Query 1157 TCCAGAGAAAACATATGCAAAGGACACATTAGATGAGCCGAAGCGGATAGCAAAGAAGCT 1216
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 TTCAGAGAAAACATATGCAAAGGACACATTAGATGAGCCGAAGCGGATAGCAAAGAAGCT 1544
Query 1217 TACTTCTCATGTATCTGGTACGGGTTGCCATAAGAAAGTTTCTGAAGGAAGCAATAGAAA 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TACTTCTCATGTATCTGGTACGGGTTGCCATAAGAAAGTTTCTGAAGGAAGCAATAGAAA 1604
Query 1277 GAGGGACAATGATTTACATCGGTTGCTGTTTATGCCTAATGGACTTCCAGACGGGACTGA 1336
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 AAGGGATAATGATTTACATCGGTTGCTGTTTATGCCTAATGGACTTCCAGACGGGACTGA 1664
Query 1337 ATTGGCTTACTATGTGAAAACGCAGAAACTACTACAGGGTTACAAGCAAGGAAGTGGTAT 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ATTGGCTTACTATGTGAAAACGCAGAAACTACTACAGGGTTACAAGCAAGGAAGTGGTAT 1724
Query 1397 AGTATGTAGCTGCTGCAGCAGAGAGATTAGTCCTTCGCAATTTGAAGCGCATGCTGGAAT 1456
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1725 AGTATGTAGCTGCTGCAGTAGAGAGATTAGTCCTTCGCAATTTGAAGCGCATGCTGGAAT 1784
Query 1457 GGCTGCTAGACGACAACCTTATCGTCATATCTTCATTTCTTCTGGATTGTCATTGCATGA 1516
||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1785 GGCGGCTAGACGACAACCTTATCGACATATCTTCATCTCTTCTGGATTGTCATTGCATGA 1844
Query 1517 TATAGCCATGTCACTGGCCAATGGACATGTCATTACAACTGGTGACAGTGATGACATGTG 1576
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1845 TATAGCCATGTCACTGGCCAATGGACATGTCATTACAACTGGTGATAGTGATGACATGTG 1904
Query 1577 TTCCATTTGTGGGGATAGTGGAGATTTGCTACTTTGTGCTGGATGTCCTCAAGCATTTCA 1636
||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1905 TTCTATTTGTGGGGATGGTGGAGATTTGTTACTTTGTGCTGGATGTCCTCAAGCATTTCA 1964
Query 1637 TACAGCTTGTTTGAAATTTCAGTCTATGCCTGAAGGTACTTGGTACTGTTCGAGCTGCAA 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 TACAGCTTGTTTGAAATTTCAGTCTATGCCTGAAGGTACTTGGTACTGTTCGAGCTGCAA 2024
Query 1697 TGATGGACCTATTTCTTGTAAAAAGGCTACTGCTACTGATCCTTCTGGCAACGCTAGGCC 1756
|||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2025 TGATGGACCTATCTCTAGTAAAAAGGCTACTACTACTGATCCTTCTGGCAACGCTAGGCC 2084
Query 1757 TATAGTTATAAGACTGTCAAGAGTCGTGAAAGCGCCAGAAAGCGAAATTGGGGGCTGTGT 1816
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2085 TATAGTTATAAGACTCTCAAGAGTCGTGAAAGCGCCAGAAAGCGATATTGGTGGCTGTGT 2144
Query 1817 GTTCTGCAGGTCCCATGATTTTAGCATTGGAAAATTTGATGATAGGACTGTTATTCTCTG 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 GTTCTGCAGGTCCCATGATTTTAGCATTGGAAAATTTGATGATAGGACTGTTATTCTCTG 2204
Query 1877 TGACCAGTGTGAGAAAGAGTACCATGTTGGTTGCCTGAGGGAGAATGGGCTCTGTGATTT 1936
||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 2205 TGACCAGTGTGAGAAAGAGTACCATGTTGGTTGCCTGAGAGAGAACGGGTTCTGTGATTT 2264
Query 1937 GAAAGAAATCCCGCAGGAGAAATGGTTCTGCTGTAGCGACTGCAGCAGGATTCACACGGC 1996
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2265 GAAAGAAATCCCGCAGGAGAAATGGTTCTGCTGTAGCAATTGCAGCAGGATTCACACGGC 2324
Query 1997 AGTTCAGAATTCTGTTTCTTGTGGGCCACAAACTATTCCTACTCCTTTGTTAGACATGAT 2056
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2325 AGTTCAGAATTCTGTTTCTTGTGGGCCACAAACTCTTCCTACACCTTTGTTAGACATGAT 2384
Query 2057 ATGCAGAAAAGACAGAGAAAAAGGAATATTTACCGATAATGGGGATATAGTCGAATGGAG 2116
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2385 ATGCAGAAAAGACAGAGAAAAAGGAATATTTACCGATATTGGGGATACAGTCGAATGGAG 2444
Query 2117 AATACTTAGTGGAAAAAGTCGATACCCAGAGCATCTGCCTTTGCTTTCACGAGCGGCTGT 2176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 AATACTTAGTGGAAAAAGTCGATACCCAGAGCATCTGCCTTTGCTTTCACGAGCGGCTGT 2504
Query 2177 AATCTTCAGGGAGTGTTTTGATCCCATTGTTGCAAAGTCTGGCCGCGATCTCATTCCTGT 2236
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 2505 TATCTTCAGGGAGTGTTTTGATCCCATTGTTGCAAAGTCTGGCCGTGATCTGATTCCTGT 2564
Query 2237 CATGGTGTATGGGAGAAATATATCTGGCCAGGAGTTTGGAGGAATGTACTGTTTGGTCCT 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565 CATGGTGTATGGGAGAAATATATCTGGCCAGGAGTTTGGAGGAATGTACTGTTTGGTCCT 2624
Query 2297 GATTGTAAATTCTCTTGTTGTTTCTGCTGCGCTGCTGAGGATATTTGGTCAGCAAGTTGC 2356
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2625 GATAGTAAATTCTCTTGTTGTTTCTGCTGCGCTGCTGAGGATATTTGGTCAGGAAGTTGC 2684
Query 2357 TGAACTTCCTATTGTAGCGACTAGCCGAGAGTACCAAGGAAGGGGCTACTTCCAAGGGCT 2416
|||||||||||| || || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 2685 TGAACTTCCTATAGTGGCCACAAGCCGAGAGTACCAAGGAAGGGGATACTTCCAAGGGCT 2744
Query 2417 GTATGCTTGTGTAGAGAATCTTCTTTCTTCTTTAAATGTTGAGAACCTGGTCCTTCCGGC 2476
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2745 GTATGCCTGTGTAGAGAATCTTCTTTCTTCTTTAAATGTTGAGAACCTGGTTCTTCCGGC 2804
Query 2477 AGCTGAAGAAGCAGAGTCTATATGGACAAAGAAGTTTGGCTTTACAAAGATGTCTGACCA 2536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2805 AGCTGAAGAAGCAGAGTCTATATGGACAAAGAAGTTTGGCTTTACAAAGATGTCTGACCA 2864
Query 2537 GCAATTGCAGGAGTACCAAAAGGAAGTGCAGCTTACAATATTCAAAGGAACCTCAATGCT 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2865 GCAATTGCAGGAGTACCAAAAGGAAGTGCAGCTTACAATATTCAAAGGAACCTCAATGCT 2924
Query 2597 GGAGAAGAAAGTACCTAAGACGACGA-G--TTTATCAGAATCAACAACTCTCATCTCATC 2653
||||||||||||||||||| |||| | | |||||||||||| ||||||||||||| |||
Sbjct 2925 GGAGAAGAAAGTACCTAAGGCGACAACGGGTTTATCAGAATCTACAACTCTCATCTGATC 2984
Query 2654 TGAT-CATTAAAAGATTCGTCAAGATTTTGGTGTCCGGATCTTTCCTCTTCTCTGttttt 2712
|| | | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2985 TGTTTCGTTAAAAGATTCGTCAAGATTTTGGTGTTCGGATCTTTCCTCTTCTTTGTTTTT 3044
Query 2713 ttgttttctggaagatggaacagttttttggtaacttttttgtaatatttttgAATATAG 2772
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 3045 --GTTTTCTGGAAGATGGAACCGTTTTTTGGTAA-TTTTTTGTAATATTTTTGAATATAG 3101
Query 2773 ATAGTAGGTTT-ACAAAGAAGTCACAGAACAGTTCCATGTTTTTGTATAGAGACCAA 2828
||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 3102 ATAGTAGGTTTTACAAAGAAGTCCCAGAACAGTTCCATGTTTT-GTATAGAGACCAA 3157
Score = 1382 bits (748), Expect = 0.0
Identities = 937/1025 (91%), Gaps = 25/1025 (2%)
Strand=Plus/Plus
Query 1 AGATCTAACTCAAGTTAGTGTTAAGTGTTGTGTCTATTGTATGCAATCGTGTTGTGATAT 60
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||
Sbjct 420 AGATCTAACTCAAGTTAGTGTT-ACTGTTGTGTCTATTGGATGCAATCGTGTTGTGATAT 478
Query 61 TGAATCTATTTCTGATGGGAGAAGGAATTATTTGTTTGGAGATGCCAATGGAAGAGAATT 120
||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 479 TGAATATATTTCTGATGGGAGAAGGAACTATTTGTTTGGAGATGCCAAAGGAAGAGAA-T 537
Query 121 CATCAA-TG-GGTCA-ATTCAAAAGA-GA-GCGACTTGATGAAAGTAATAAAGGTGATCA 175
|||| || | || || || | || ||||||| |||||||||| |||||
Sbjct 538 GGTCAATTGAAAAGAGATAGGCTTGATGATGATAC-TGATGAAGGTAATAAAGGAGATCA 596
Query 176 CTTTCCCAATAAGAAACAAGCCAAAGAAGCTTCTAACGATGACATTACATCGGAGATTTC 235
|||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 597 CTTTCCCAGTAAGAAACAAGCTAAAGAAGCTTCTAATGATGACATTACATCGGAGATTTC 656
Query 236 AAATCCCGTCGCATCTCCGGTTGAAAGCACGTCACTTTTTCGTGATGTCTCTAGTCAGCC 295
|||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 657 AAATCCAGTCGCTTCTCCGGTTGAAAGCACGTCTCTTTTTCGTGATGTCTCTAGCCAGCC 716
Query 296 GATTAAATCCGGTTTAGGTGAGTGCTCCGGAAGTGATTTTGGTTCCGAAGAGACTGTTAG 355
| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 717 GGTTAAATCCGGTTTAGTTGAGTGCTCCGGGAGTGATTTTGGGTCCGAAGAGACTGTAAG 776
Query 356 TGACGATGCATCCGTAGCAGGTAGCTCACAAACAGAGCAGTCGAGTGATGTTTTACCATC 415
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGACGATGCATCCGTTGTAGGTAGCTCACAAACAGAGCAGTCGAGTGATGTTTTACCATC 836
Query 416 TCGTTTTGTGCTGGAGATTCCTAAGCATCTAAGCTCGACTGGGATCACGAAAATCACGTT 475
|||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 837 TCGTTTTGTGTTGGAGATTCCTAAGCATCTTAGCTCGACTGGGATCACGAAGATCACGTT 896
Query 476 TAAGTTGAGTAAACCAAAGCAGGAATTTGATGATTTGCCGGTGATAAAGGATCACACTTG 535
||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||
Sbjct 897 TAAGTTGAGTAAACCAAAGAAGGAATTTGATGATTTGCCTTTGATAAAGGATCATACTTG 956
Query 536 TGACGGTGGTGTTGTGAAGATGCCGAAG---AAGATTGTTTCTTTGAGCTACCCATCTAA 592
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 957 GGACGCTGGTGTTGTGAAGATGCCGAAGAAAAAGATTGTTTCTTTGAGCTACCCATCTAA 1016
Query 593 TGTGAAGAAGCTATTAGAAACGGGTATACTTGTAGGCGCTCCAGTGAAGTATATTTCAAC 652
||| ||||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1017 TGTCAAGAAGCTATTGGAAACGGGTATACTTGAAGGAGCTCGAGTGAAGTATATTTCAAC 1076
Query 653 CCCACCTGTGAGAGAGCTTCAGGGGATAATCCATTCGGGTGGGTATTTGTGTGGCTGTAC 712
||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1077 CCCACCTGTGAGACAGCTTCTGGGGATAATCCATTCGGGTGGCTATTTGTGTGGCTGTAC 1136
Query 713 AACGTGCAGTTTCTCGAAAGTTCTAAGTGCGTATGAGTTTGAGCAGCATGCTGGTGCAAA 772
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AACTTGCAATTTCTCGAAAGTTCTAAGTGCGTATGAGTTTGAGCAGCATGCTGGTGCAAA 1196
Query 773 AACTAGACATCCTAATAATCACATATTTTTGGAGAATGGAAGGGCGGTTTATAATATAGT 832
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1197 AACTAGACATCCTAATAATCACATATTTTTGGAGAATAGAAGGGCGGTTTATAACATAGT 1256
Query 833 TCAAGAACTGAAGACTGCTCCTCGTGATGTTCTCGAGGAAGTGATAAGGAATGTAGCTGG 892
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1257 TCAAGAACTGAAGACTGCTCCTCGTGTTGTTCTCGAGGAAGTGATAAGGAATGTAGCTGG 1316
Query 893 TTCTGCTCTGAATGAAGAGGGCTTACAAGCTTGGAAAGGTGATGGCCAGCAAGTTTCCAA 952
||||||||||||||| |||||||||| ||||||||||| | | | ||||||||
Sbjct 1317 TTCTGCTCTGAATGAGGAGGGCTTACGAGCTTGGAAAG-------C-A--A-GTTTCCAA 1365
Query 953 CAGAGTAATAGCATGTCTGACCGGAACCATATCACGGAACATTCCACTGTCAGTGATATA 1012
|||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||
Sbjct 1366 CAGAGTAATAGCATGTCTGACCGGAATTATATTACGGATCATTCCACTGTCAGT--TAT- 1422
Query 1013 CTTGG 1017
|||||
Sbjct 1423 CTTGG 1427
> AT3G53680.1 | Symbols: | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type
zinc finger domain | chr3:19892863-19897412
REVERSE LENGTH=2526
Length=2526
Score = 1596 bits (864), Expect = 0.0
Identities = 1332/1554 (86%), Gaps = 47/1554 (3%)
Strand=Plus/Plus
Query 1077 AGTTATCTTGGTTCTGGTACTGGCCCTGGTCTTGATGAAAGTCAGAGCCT-TACTCCATG 1135
||||||| |||||||||| ||| | ||||||||| ||||| || || |||||||||
Sbjct 970 AGTTATCCTGGTTCTGGT--TGG---T-CTCTTGATGAGAGTCAAAG-CTCTACTCCATG 1022
Query 1136 CTCTGTGGAGAACCATTATTTTCCAGAGAAAA-CATATGCAAAGGACACATTAGATGA-G 1193
| | ||| || |||||||| |||||||| | | | |||||||||| | || | |
Sbjct 1023 TTTTCCAGAGGACAATTATTTTAGAGAGAAAATC-TGTACAAAGGACAC--TCGA-CACG 1078
Query 1194 C-C-GAAGCGGATAGCAAAGAAGCTTACTTCTCATGTATCTGGTACGGGTTGCCATAAGA 1251
| | |||| | ||| ||||||||||| |||||| | | ||||| ||||||||||||||
Sbjct 1079 CACATAAGCCAAAAGCTAAGAAGCTTACCTCTCATATGTTTGGTATGGGTTGCCATAAGA 1138
Query 1252 AAGTTTCTGAAGGAAG-CAATAGAAAGAGGGACAATGATTTACATCGGTTGCTGTTTATG 1310
||||||||| ||| | ||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 1139 AAGTTTCTGGAGGCGGTAAAT-GGAAGAGGGACAATGATTTACATCGGTTGCTGTTTTTG 1197
Query 1311 CCTAATGGACTTCCAGACGGGACTGAATTGGCTTACTATGTGAAAACGCAGAAACTACTA 1370
|| ||||| || || || ||||||||||||||||||||||||||| | |||||||||||
Sbjct 1198 CCAAATGGGCTACCGGATGGGACTGAATTGGCTTACTATGTGAAATCACAGAAACTACTG 1257
Query 1371 CAGGGTTACAAGCAAGGAAGTGGTATAGTATGTAGCTGCTGCAG-CAGAGAGATTAGTCC 1429
|||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||
Sbjct 1258 CAGGGTTACAAGCAAGGAAGTGGTATAGTATGTAGCTGCTGC-GACACAAAGATTAGTCC 1316
Query 1430 TTCGCAATTTGAAGCGCATGCTGGAATGGCTGCTAGACGACAACCTTATCGTC-ATATCT 1488
||| ||||| ||||| |||||||||||||||| |||||||||||||||||||| | |||
Sbjct 1317 TTCACAATTCGAAGCACATGCTGGAATGGCTGGTAGACGACAACCTTATCGTCGA-ATCC 1375
Query 1489 TCATTTCTTCTGGATTGTCATTGCATGATATAGCCATGTCACTGGCCAAT---GGACATG 1545
||| ||||| ||||||||||||||||||||||| ||||| |||| || || ||||
Sbjct 1376 ACATATCTTCCGGATTGTCATTGCATGATATAGCTGTGTCATTGGCGGATGGGGGCCATG 1435
Query 1546 TCATTACAACTGGTGACAGTGATGACATGTGTTCCATTTGTGGGGATAGTGGAGATTTGC 1605
|||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 1436 TCATTACAACTGGTGACAGTGATGACATGTGTTCTATTTGTGGCAATGGTGGAGATTTGC 1495
Query 1606 TACTTTGTGCTGGATGTCCTCAAGCATTTCATACAGCTTGTTTGAAATTTCAGTCTATGC 1665
||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||
Sbjct 1496 TACTTTGTGCTGGATGTCCTCAAGCATTTCATACAGCATGCTTGAAATTTCAATCAATGC 1555
Query 1666 CTGAAGGTACTTGGTACTGTTCGAGCTGCAATGATGGACCTATTTCTTGTAAAA-AGGCT 1724
|||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||
Sbjct 1556 CTGAAGGTACTTGGTACTGTTCAAGCTGCAATGATGGACCTACCTCTTGTAAAATA-GCC 1614
Query 1725 ACTGCTACTGATCCTTCTGGCAACGCT-AGGCCTATAGTTATAAGACTGTCAAGAGTCGT 1783
||||||| |||| | | ||| | | || ||||||||||||||| ||||||| ||
Sbjct 1615 ACTGCTAGTGAT-C--C---CAA-TTTAAAACCCATAGTTATAAGACTGACAAGAGTTGT 1667
Query 1784 GAAAGCGCCAGAAAGCGAAATTGGGGGCTGTGTGTTCTGCAGGTCCCATGATTTTAGCAT 1843
||||| ||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct 1668 TAAAGCACCAGAAAGCGAAATTGGTGGTTGCGTGTTCTGCAGGTCGCATGATTTTAGCAT 1727
Query 1844 TGGAAAATTTGATGATAGGACTGTTATTCTCTGTGACCAGTGTGAGAAAGAGTACCATGT 1903
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 1728 TGGGAAATTTGATGATAGGACAGTTATTCTCTGTGACCAGTGCGAGAAAGAGTACCACGT 1787
Query 1904 TGGTTGCCTGAGGGAGAATGGGCTCTGTGATTTGAAAGAAATCCCGCAGGAGAAATGGTT 1963
||||| || ||||| |||| ||| ||||||||||||| |||||| || || ||||||||
Sbjct 1788 CGGTTGTCTCAGGGAAAATGAGCTTTGTGATTTGAAAGGAATCCCCCAAGATAAATGGTT 1847
Query 1964 CTGCTGTAGCGACTGCAGCAGGATTCACACGGCAGTTCAGAA-TTCTGTTTCTTGTGGGC 2022
||||||||| ||||||||||||||||||| || |||| || |||| ||| |||||||
Sbjct 1848 CTGCTGTAGTGACTGCAGCAGGATTCACAGGGTTCTTCA-AAGCTCTGCTTCATGTGGGC 1906
Query 2023 CACAAACTATTCCTACTCCTTTGTTAGACATGATATGCAGAAAAG-ACAGAGAAAAAGGA 2081
||||||||||||| || | ||||||||||| |||| |||| |||| ||||||||||||||
Sbjct 1907 CACAAACTATTCCCACGCTTTTGTTAGACACGATAAGCAG-AAAGTACAGAGAAAAAGGA 1965
Query 2082 ATATTTACCGATAATGGGGATA-TAGTCGAATGGAGAATACTTAGTGGAAAAAGTCGATA 2140
|||| || || ||||| ||| | || || ||||| || ||||||||||||||||||||
Sbjct 1966 ATATATATTGACAATGGAAATACT-GTGGAGTGGAGGATGCTTAGTGGAAAAAGTCGATA 2024
Query 2141 CCCAGAGCATCTGCCTTTGCTTTCACGAGCGGCTG-TAATCTTCAGGGAGTGTTTTGATC 2199
|||||||||||| || || ||||||||||| ||| || | |||||||||||||||||||
Sbjct 2025 CCCAGAGCATCTACCCTTACTTTCACGAGCAGCTACTATT-TTCAGGGAGTGTTTTGATC 2083
Query 2200 CCATTGTTGCAAAGTCTGGCCGCGATCTCATTCCTGTCATGGTGTATGGGAGAAATATAT 2259
||||||| ||||||||||| || |||||||||||||||||||| ||||||||||| ||||
Sbjct 2084 CCATTGTGGCAAAGTCTGGTCGTGATCTCATTCCTGTCATGGTCTATGGGAGAAACATAT 2143
Query 2260 CTGGCCAGGAGTTTGGAGGAATGTACTGTTTGGTCCTGATTGTAAATTCTCTTGTTGTTT 2319
|||||||||||||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 2144 CTGGCCAGGAGTTTGGAGGAATGTACTGCTTGGTCCTGATGGTGAATTCCCTAGTTGTTT 2203
Query 2320 CTGCTGCGCTGCTGAGGATATTTGGTCAGCAAGTTGCTGAACTTCCTATTGTAGCGACTA 2379
|||| |||||||| ||||||||||||||| ||||||| ||||||||||||||||| || |
Sbjct 2204 CTGCCGCGCTGCTTAGGATATTTGGTCAGAAAGTTGCAGAACTTCCTATTGTAGCTACAA 2263
Query 2380 GCCGAGAGTACCAAGGAAGGGGCTACTTCCAAGGGCTGTATGCTTGTGTAGAGAATCTTC 2439
|||||||||| || |||||||||||||| |||||||||| |||||| || ||||||||||
Sbjct 2264 GCCGAGAGTATCAGGGAAGGGGCTACTTTCAAGGGCTGTTTGCTTGCGTTGAGAATCTTC 2323
Query 2440 TTTCTTCTTTAAATGTTGAGAACCTGGTCCTTCCGGCAGCTGAAGAAGCAGAGTCTATAT 2499
|||| ||| | |||||||||||| || | || || |||||||||||||| |||||||| |
Sbjct 2324 TTTCCTCTCTGAATGTTGAGAACTTGCTTCTCCCAGCAGCTGAAGAAGCTGAGTCTATCT 2383
Query 2500 GGACAAAGAAGTTTGGCTTTACAAAGATGTCTGACCAGCAATTGCAGGAG-TACCAAA-A 2557
||||||| || ||||| || ||||||||| |||| || | ||| ||| || ||||| | |
Sbjct 2384 GGACAAATAAATTTGGATTCACAAAGATGACTGAACATCGATTACAG-AGGTACCAGAGA 2442
Query 2558 GGAAGTGCAGCTTACAATATTCAAAGGAACCTCAATGCTGGAGAAGAAAGTACC 2611
| ||||||| || ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct 2443 G-AAGTGCAACTAACAATCTTCAAGGGAACATCGATGCTCGAGAAGAAAGTACC 2495
> AT5G05435.1 | Symbols: | other RNA | chr5:1606552-1607656 FORWARD
LENGTH=626
Length=626
Score = 52.8 bits (28), Expect = 2e-05
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 635 AGTGAAGTATATTTCAACCCCACCTGTG 662
||||||||||||||||||||||||||||
Sbjct 245 AGTGAAGTATATTTCAACCCCACCTGTG 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 141420612317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5