BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482753
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
AT2G37570.1 | Symbols: SLT1 | HSP20-like chaperones superfamily... 3075 0.0
> AT2G37570.1 | Symbols: SLT1 | HSP20-like chaperones superfamily
protein | chr2:15761300-15763373 REVERSE LENGTH=2074
Length=2074
Score = 3075 bits (1665), Expect = 0.0
Identities = 1952/2083 (94%), Gaps = 50/2083 (2%)
Strand=Plus/Plus
Query 1 GAGGAAGAAGAAGAAAAATCAAGATTTGTTGTGTTGGCGAATCCACAGAGACT--G--AT 56
||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct 1 GAGGAAGAAGAAGAAAAATCAAGATTTGTTGTGTTGGCGAAGCCACAGAGACTGAGTAAT 60
Query 57 C----C-ATTTTGGTTGCTAATGATGATGACGATACCATCTGCATCGTGCTCATCTTAGC 111
| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATTCGATTTTGTTTGCTAATGATGATGACGATACCATCTGCATCGTGCTCATCTTAGC 120
Query 112 TTCCTCCTCTTTCTGGGTTTATCT---CT-----C------------CT--TTTTT-CAT 148
|| ||||||||||||||||||||| || | || ||||| |||
Sbjct 121 TTTCTCCTCTTTCTGGGTTTATCTGTGCTTAAGGCAAAAAAAGAGTGCTCCTTTTTTCAT 180
Query 149 ATCTTCTTCAAAGTTTCGATTTTTGTGTG-TGTTTAT-AGGATTTCATGAT-TTAACAAT 205
|||||||||||||||||| ||||| | || ||||||| || || | | || ||||||||
Sbjct 181 ATCTTCTTCAAAGTTTCGTTTTTTTT-TGGTGTTTATTAGAATCT-A-GAAGTTAACAAT 237
Query 206 TGGATCAGACCCAATCACCAAAATAGGGGTTAGATATATCTGTAAGTAGTTTGGTTCTTT 265
|||| | ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 238 TGGAGAATTTGGAATTGGGAAAATAGGGGTTAGATATATCTGTAAGTGGTTTGGTTCTT- 296
Query 266 CT-AGCAATTGTTTAACTTTGGGAGAGGAAGATGAGAATTTCAAGTGTTGTTATGGTTAT 324
|| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 297 CTTAGCAAGTGTTTAACTTTGGGAGAGGAAGATGAGAATTACAAGTGTTGTTATGGTTAT 356
Query 325 TGGCTATGAGACTTGTCTCTGGTGTGAGCTGAAATGGTGTTAGATACTTTGTTTGA-CGT 383
|||||||||||||||||||||||||||||||| |||||| |||||||||||||| | |||
Sbjct 357 TGGCTATGAGACTTGTCTCTGGTGTGAGCTGAGATGGTGGTAGATACTTTGTTTTAACGT 416
Query 384 CTTGGTTATGGAGAATCATCATCCTTCTACTCTCTTGTCTATGGATTCAAGTGCTTCTTC 443
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 417 CTTGGCTATGGAGAATCATCATCCTTCTACTCTATTGTCTATGGATTCAAGTGCTTCTTC 476
Query 444 TCATGAGGAGCTTGATTTGGAGATGAATAATAACAACAGGCAATCTCTGCTCTCTGGCCC 503
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 477 TCATGAGGAGCTTGATTTGGAGATGAATAA---CAACAGGCAATCTCTGCTCTCTGGCCC 533
Query 504 TCCTGATATCAATTTACCTCTCTCAGCTGAGAGAAGTCCTCCTCCTCAGCCTTGGAATTT 563
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 534 TCCTGATATCAATTTACCTCTCTCAGCTGAGAGAAGTCCTCCTCCTCCGCCGTGGAATTT 593
Query 564 GGATGTTTGTGACATTTTGGATGTTGGGTTAGGTTCACAAGCTTATGAGACTGAGAATTA 623
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGATGCTTGTGATATTTTGGATGTTGGGTTAGGTTCACAAGCTTATGAGACTGAGAATTA 653
Query 624 CATGAGTGTTGTGCCTAAGGTTGGGAGGAAATGTGCTAAACGTGTTGATAGTGTATGGGG 683
|||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 654 CATGAGTGTTGTACCTAAGGTTGGGAGGAAATGTGCTAAACGTGTTGATAGTATCTGGGG 713
Query 684 TGCTTGGTTTTTCTTTAGTTTCTACTTCAAGCCTGCGTTAAACGAGAAATCAAAGGCGAA 743
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGCTTGGTTTTTCTTCAGTTTCTACTTCAAGCCTGCGTTAAACGAGAAATCAAAGGCGAA 773
Query 744 AATCGTCCGGGATAGTAATGGGATATCTGGTTTTGACAAGTCGGATTTGAAGCTTGATGT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AATCGTCCGGGATAGTAATGGGATATCTGGTTTTGACAAGTCGGATTTGAAGCTTGATGT 833
Query 804 GTTTCTAGTTCAGCATGATATGGAGAATATGTATATGTGGGTGTTTAAGGAAAGACCTGA 863
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GTTTTTAGTTCAGCATGATATGGAGAATATGTATATGTGGGTGTTTAAGGAAAGACCTGA 893
Query 864 GAATGCACTTGGGAAGATGCAGTTGAGGAGTTACATGAACGGGCATTCGAGACAAGGGGA 923
||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 894 GAATGCACTAGGGAAGATGCAGTTGAGGAGTTACATGAATGGTCATTCTAGACAAGGGGA 953
Query 924 TCGTTTGTTTCCATTTAGTGTTGAGAAAGGTTTTGTTAGGTCTCATAGAATGCAGAGGAA 983
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 954 TCGTTTGTTTCCATTTAGTGTTGAGAAAGGGTTTGTTAGGTCTCACAGAATGCAGAGGAA 1013
Query 984 ACACTACAGAGGTTTGTCAAATCCGCAGTGTGTTCATGGGATTGAGCTTGTTCCTTTGCC 1043
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1014 ACACTACAGAGGTTTGTCGAATCCGCAGTGCGTTCATGGGATTGAGCTTGTTCCTTTGCC 1073
Query 1044 AAACCTCACGTGTCTAGATGAGGAAGAGAGGAAAAGGTGGATGGAGCTTACGGGTCGCGA 1103
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1074 AAACCTCACGTGTCTAGATGAAGAAGAGAGGAAAAGGTGGATGGAGCTTACGGGTCGTGA 1133
Query 1104 TTTGAATTTCACCATTCCACCTGAAGCTAGCGACTTTGGTTCGTGGAGAAACCTCCCCAA 1163
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 1134 TTTGAATTTCACCATTCCACCTGAAGCTAGTGACTTTGGTTCTTGGAGAAACCTTCCCAA 1193
Query 1164 CACTGACTTTGAGCTTGAGAGGCCTACACCTT-T--GAAGAATCCTACTCCAAGCCACTC 1220
|||||||||||||||||||||||||||||||| | ||||||||||||| ||| ||||||
Sbjct 1194 CACTGACTTTGAGCTTGAGAGGCCTACACCTTCTTTGAAGAATCCTACTGCAAACCACTC 1253
Query 1221 TAAGAAATTACTCAATGGATCGGGGCTCAATCTCTCAACTCAACCATCCAACCATTCTAA 1280
||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1254 TAAGAAACTACTCAATGGCTCGGGGCTCAATCTCTCGACTCAACCATCCAACCATTCTAA 1313
Query 1281 TGGTGAAGCAACTGATTTATCTCCTTCGAGCCACAAGAAGAGGAAGGACTTGTTCTCAAA 1340
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TGGTGAAGCAACCGATTTATCTCCTTCGAGCCACAAGAAGAGGAAGGACTTGTTCTCAAA 1373
Query 1341 TGGGATTCATGAGGAGGAGTGTTGCTTAACCGTAAACCCACCACCTCCTGTTATCGAAGC 1400
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1374 TGGGATTCATGAGGAGGAGTGTTGCTTAACTGTAAACCCACAACCTCCTGTTATCGAAGC 1433
Query 1401 TCACCAGAATGAGCTACCAACTTGGTCAAACGAGTTTAGC-GGCGCCATGAAAAACGTTT 1459
|||||||||||||||||| ||||||||||||||||||| | || ||||||||||||||||
Sbjct 1434 TCACCAGAATGAGCTACCTACTTGGTCAAACGAGTTTA-CTGGGGCCATGAAAAACGTTT 1492
Query 1460 ATGGACCTGTTACTGCTGCAAAAACGATCTATGAGGACGAAGAAGGCTACTTGATCATAA 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 ATGGACCTGTTACTGCTGCAAAAACGATCTATGAGGACGAAGAAGGCTACTTGATCATAA 1552
Query 1520 TCAGCCTTCCTTTTGTGGATTTGAACAGCGTTAAAGTCTCGTGGAGGAACACTCTCACAC 1579
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1553 TCAGCCTTCCTTTTGTGGATTTGAACAGCGTTAAAGTCTCCTGGAGGAACACTCTCACAC 1612
Query 1580 ACGGAATCATAAAAGTTTCATGCCTCAGCACATCGCGCATACCTTTCATAAAGAGACATG 1639
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1613 ATGGAATCATAAAAGTTTCATGCCTCAGCACATCGCGCGTACCTTTCATAAAGAGACATG 1672
Query 1640 ATAGAACATTCAAGTTGACTGATTCAGCCTCCGAGCATTGCCCGCCAGGTGAATTTGTCA 1699
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1673 ATAGAACATTCAAGTTGACTGATTCAGCCTCTGAGCATTGCCCGCCAGGTGAATTTGTCA 1732
Query 1700 GAGAGATCCCGTTATCAACCCGAATCCCGGAAGATGCAAACATTGAAGCGTATTATGATG 1759
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1733 GAGAGATCCCATTATCAAACCGAATCCCGGAAGATGCAAACATTGAAGCGTATTACGATG 1792
Query 1760 GACCTGGATCAGTTCTTGAGATACTTGTCCCGAAACTAAGAGCTGGCCCGGAAGAGCACG 1819
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1793 GACCTGGATCAGTTCTTGAGATACTTGTCCCAAAACTAAGAGCTGGCCCGGAAGAGCACG 1852
Query 1820 AGGTGCGGGTGTGTCTCCGTCCTAATCTCAGCGGAAACGATCTTATGCTGACTTAAGAAG 1879
|||||||||||||||||||||| || ||| | |||||||||||||||||||||||| |||
Sbjct 1853 AGGTGCGGGTGTGTCTCCGTCCCAACCTCGGTGGAAACGATCTTATGCTGACTTAAAAAG 1912
Query 1880 AGAAACATTTGTTTAGTTTTCTTGTTTGTAGAAGCTTATTATAGGAGTCATCTCTCATTG 1939
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1913 AGAAACAACTGTTTAGTTTTCTTGTTTGTAGAAGCTTATTATAGGAGTCATCTCTCATTG 1972
Query 1940 ATACTGGCCACTCATATATAGCCGTTTTCACTGTTTTAATGGGATTTTTCATCACAATGC 1999
||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct 1973 ATATTGGCCACTCATATATAGGCGTTTTCACTGTTTTAATGGGATTTTTCA-CACATTGC 2031
Query 2000 AGTCTTGTTTACGTTGTGTTGGAATCAACCCTACCCATAGATT 2042
| |||||| |||||||||||||||||||||||| |||||||||
Sbjct 2032 AATCTTGTGTACGTTGTGTTGGAATCAACCCTATCCATAGATT 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101204298720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5