BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482819 Length=1931 Score E Sequences producing significant alignments: (Bits) Value AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane a... 3029 0.0 > AT2G38120.1 | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15972993-15977180 FORWARD LENGTH=2135 Length=2135 Score = 3029 bits (1640), Expect = 0.0 Identities = 1854/1954 (95%), Gaps = 28/1954 (1%) Strand=Plus/Plus Query 1 GAAGCATCTTGTAGTATTTTTAGCTTCATTCCTTCTCTTGCTCAGATCAAAG-------- 52 |||||||||| ||||||||||||||||||||||||| |||||| |||||||| Sbjct 1 GAAGCATCTTATAGTATTTTTAGCTTCATTCCTTCTTTTGCTCTGATCAAAGTCTTCTCC 60 Query 53 -t--c-t-tctctctctttcctcctctgcacatttctggg---ttctcttcttatgctct 104 | | | |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 TTCCCTTCTCTCTCTCTTTCCTCCTCTGCACATTTCTGGGTTCTTCTCTTCTTATGCTCT 120 Query 105 gtttctttAAAGACACAGAAGAAAGAGAGTACAGAGTTGTGATTTTCTTAAAC-AAAGTG 163 |||||||| |||||||||||| || | |||||||||||| ||||||||||||| |||||| Sbjct 121 GTTTCTTTTAAGACACAGAAG-AA-ACAGTACAGAGTTGAGATTTTCTTAAACAAAAGTG 178 Query 164 AAAA-AGAAGAAACAAGTGACAGCTCAAACGGACAAAAACTAGTCTTGGGTCTTTCTTGT 222 |||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 179 AAAAGAGAAGAAACAAGTGACAGCTCAAACGGACAAAAACCACTCTTGGGTCTTTCTTGC 238 Query 223 TTCTGATTCTTTCTCTTCTCTAAAAGAAGAAAACATCTAGAAGCTAGAAAAATGTCGGAA 282 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 239 TTCTGATTCTTTCTCTTCTCTAATAGAAGAAAACATCTAGAAGCTAAAAAAATGTCGGAA 298 Query 283 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGATGAACGGAAACCGTACC 342 |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 299 GGAGTAGAAGCGATAGTAGCAAATGACAACGGAACAGATCAGGTAAACGGAAACCGTACC 358 Query 343 GGAAAAGACAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTCTGG 402 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 359 GGGAAAGATAACGAAGAACACGACGGCTCCACCGGTTCTAACCTAAGCAATTTCCTATGG 418 Query 403 CATGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 462 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 CACGGTGGCTCTGTCTGGGACGCTTGGTTCAGCTGCGCATCTAACCAAGTGGCTCAAGTG 478 Query 463 CTATTGACATTACCGTACTCGTTTAGTCAATTAGGGATGTTATCAGGAATAGTACTTCAG 522 ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 479 TTATTGACATTACCGTACTCGTTTAGTCAACTAGGAATGTTATCAGGAATAGTACTTCAG 538 Query 523 ATCTTCTATGGTTTACTCGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAG 582 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 539 ATCTTCTATGGTTTACTAGGAAGCTGGACTGCTTATCTCATCTCTGTTCTCTACGTCGAA 598 Query 583 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TACAGAGCTCGTAAAGAAAAAGAAGGCAAAAGCTTCAAAAACCACGTCATTCAGTGGTTT 658 Query 643 GAAGTACTCGATGGATTACTTGGTTCATATTGGAAAGCAGTAGGACTCGCATTTAATTGC 702 |||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 659 GAAGTACTTGATGGATTACTTGGTTCATACTGGAAAGCACTAGGACTCGCATTTAATTGC 718 Query 703 ACTTTTCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 762 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 ACTTTCCTCTTGTTTGGATCTGTTATCCAACTCATTGCTTGTGCCAGTAACATTTATTAC 778 Query 763 ATAAACGATCATTTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 822 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ATAAACGATCATCTGGACAAGAGAACATGGACTTACATATTTGGCGCGTGTTGTGCAACC 838 Query 823 ACTGTCTTTATACCGTCGTTTCATAATTACCGAATTTGGTCGTTCCTTGGCCTTGGTATG 882 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||| Sbjct 839 ACTGTCTTTATACCGTCGTTTCACAATTACCGAATTTGGTCATTCCTTGGCCTTGGAATG 898 Query 883 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGACGGAGGGT 942 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 899 ACCACTTACACCGCTTGGTACTTAGCCATTGCCTCCATCATCCACGGCCAGGCGGAAGGT 958 Query 943 GTGAAACACTCAGGTCCAACAAAGCTAGTGCTTTATTTTACCGGAGCCACAAATATTTTG 1002 |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 959 GTGAAACATTCAGGTCCAACAAAGCTAGTGCTTTATTTTACGGGAGCCACAAATATTTTG 1018 Query 1003 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 TACACCTTTGGAGGTCACGCGGTTACTGTTGAGATTATGCATGCTATGTGGAAACCACAG 1078 Query 1063 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTTTTCACACTAACTATTCCGTCG 1122 |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 1079 AAGTTTAAGTACATTTACTTGATGGCGACGTTATACGTGTTCACGCTAACGATTCCGTCA 1138 Query 1123 GCTGCCGCCGTTTACTGGGCCTTCGGAGACGCACTTCTCGACCACTCCAACGCCTTCTCT 1182 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 1139 GCTGCCGCCGTTTACTGGGCTTTCGGAGACGCACTTCTCGACCACTCCAACGCTTTCTCT 1198 Query 1183 CTCATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1242 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 CTTATGCCCAAGAACGCGTGGCGTGACGCCGCTGTTATCCTCATGCTCATTCATCAGTTT 1258 Query 1243 ATAACGTTCGGGTTCGCATGTACACCATTGTACTTTGTGTGGGAGAAAGTGATAGGGATG 1302 ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| Sbjct 1259 ATAACGTTCGGGTTCGCTTGTACACCTTTGTACTTTGTGTGGGAGAAAGTGATTGGGATG 1318 Query 1303 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTTGTTATACCGATT 1362 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 1319 CATGACACAAAGAGCATTTGCTTAAGGGCTTTGGCTAGATTGCCTGTGGTCATACCTATT 1378 Query 1363 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCCATCAATTCCGCCGTCGGTGCTCTT 1422 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 1379 TGGTTCTTAGCTATTATCTTCCCCTTTTTCGGTCCAATCAATTCCGCTGTCGGTGCTCTT 1438 Query 1423 CTCGTTAGCTTCACCGTCTATATCATCCCTTCCCTCGCTCACATGCTCACTTACCGATCT 1482 || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 1439 CTTGTTAGCTTCACCGTCTATATCATCCCATCTCTCGCTCACATGCTCACTTACCGATCT 1498 Query 1483 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCAAGCTGGACGGCG 1542 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1499 GCCTCCGCTCGTCAGAATGCGGCGGAGAAGCCACCGTTCTTTATGCCGAGCTGGACGGCG 1558 Query 1543 ATGTATGTGTTGAATGCCTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTCGGGTTCGGT 1602 ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1559 ATGTACGTGTTGAATGCTTTCGTGGTGGTTTGGGTTCTTATAGTCGGATTTGGGTTCGGT 1618 Query 1603 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGATACTTTTGGTCTCTTTGCTAAG 1662 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 1619 GGATGGGCTAGTGTAACCAACTTTGTTCGTCAAGTCGACACTTTTGGTCTCTTTGCCAAG 1678 Query 1663 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCTCATGCTCCGGTCTCTGCTTTACACCAC 1722 |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| Sbjct 1679 TGTTACCAATGTAAACCAGCTGCAGCCGCCGCACATGCCCCGGTCTCCGCTTTACACCAC 1738 Query 1723 CGTCCTTGAGAGATCGAGCCAGGGGTGGTCTAATGCTTTTGTGGAGGGTTCTTAAGATTA 1782 |||| ||||||||||||| ||||| | |||||||| |||||||||||||||||| |||| Sbjct 1739 CGTCTTTGAGAGATCGAGTCAGGGTTCTTCTAATGCGTTTGTGGAGGGTTCTTAAAATTA 1798 Query 1783 TTTGTTCTTCTTTTGTGTTTTGTGGTCGTATACGTGA-GGGAGTAAAAGTCACGAAAATA 1841 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1799 TTTGTTCTTCTTTTGTGTTTTGTGTTCGTATACGTGAAGGGAGTAAAAGTCACGAAAATA 1858 Query 1842 GTGCT-CTTTT-ACAC-CTC-TTTAAATGCGTGCTAAGCTCTTAAttttttttttttctc 1897 ||| | ||||| |||| | | |||||||||||||||||||||||||| ||||||| ||| Sbjct 1859 GTG-TACTTTTTACACACCCCTTTAAATGCGTGCTAAGCTCTTAATTATTTTTTTCTCT- 1916 Query 1898 ttctggggttttgtatttttgttttCACTCCTTA 1931 || ||||||||||||||||||||||||||||||| Sbjct 1917 TT-TGGGGTTTTGTATTTTTGTTTTCACTCCTTA 1949 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95632038225 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5