BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482821 Length=559 Score E Sequences producing significant alignments: (Bits) Value AT2G38140.1 | Symbols: PSRP4 | plastid-specific ribosomal prote... 771 0.0 > AT2G38140.1 | Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980883-15981612 FORWARD LENGTH=575 Length=575 Score = 771 bits (417), Expect = 0.0 Identities = 528/578 (91%), Gaps = 22/578 (4%) Strand=Plus/Plus Query 1 ACTCTCACTACCTTATCTTCTTCT---TCTTCCTC-TCCAACAAATTCGAAAACAGCACA 56 ||||||||| |||||||||||||| ||||| || || ||||||||||||||||||||| Sbjct 1 ACTCTCACTGCCTTATCTTCTTCTGGATCTTCTTCTTCGAACAAATTCGAAAACAGCACA 60 Query 57 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGTATTATTTTCTT 116 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | Sbjct 61 CGGCGATGGCGTCGCTTATACTCGGAGCTCCTCCGCGAGTCACCGTCGCATTACCTTCCT 120 Query 117 CACGGTTATCATCATCTCACTCAGAAACCGCCGGTGtctctctctcttgctccactcagc 176 ||||||||||||| |||||||| ||||| |||||||||||||||||||||| |||||| | Sbjct 121 CACGGTTATCATCTTCTCACTCTGAAACTGCCGGTGTCTCTCTCTCTTGCTTCACTCATC 180 Query 177 aattctctctctcCACTTCATCTTCCAGCTCAATTCCACTAGTGTACTGTGGTAGAGGTG 236 ||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||||||| Sbjct 181 AATTCTCTCTCTCCACTTCCTCATCCAGCTCAATTCCACTCGTGTACTGTGGCAGAGGTG 240 Query 237 ACCGTAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCGAGAA 296 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 241 ACCGGAAAACAGCTAAAGGAAAGCGTTTCAATCACTCTTTTGGGAATGCGAGGCCAAGAA 300 Query 297 ACAAGAACAAAGGAAGAGGACCAGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 356 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 301 ACAAGAGCAAAGGAAGAGGACCGGAGAGAGTACCGGTTCCTCCAGCACCACCGAGGAAAG 360 Query 357 ATAAGTATGAGAACGATGAGAAGATCAAAATCGACATCGACGAGTCTCTCTTCTCTAATT 416 |||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 361 ATAAGTTTGAGAACGACGAGAAGATCAAAATCGATATCGACGAGTCTCTCTTCTCTAATT 420 Query 417 AGAAA-ATGAGATTCTTCA-TT-----C----ACTGTAATTTTAATTTGTTTTTAGAAAC 465 ||||| ||||||||||||| || | |||||||||||||||||||||| |||| Sbjct 421 AGAAATATGAGATTCTTCACTTGTTGTCTCTCACTGTAATTTTAATTTGTTTTTTGAAAA 480 Query 466 -CTTTGTTGATGCTGCGACTCTTTTGTTGTTAAAA-CATCTCCAA-GTTCTCATCTTTCT 522 ||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||| | Sbjct 481 GCTTTG---ATGCTACGACTCTTTTGTTGTTAAAAACATCTCCAAAGTTCTCATCTTTTT 537 Query 523 ATGAAA-GTTTGCTTCTTTATGAGTCATTGAGTCTTTT 559 |||||| |||||||||||||||| |||||||||||||| Sbjct 538 ATGAAAAGTTTGCTTCTTTATGAATCATTGAGTCTTTT 575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26825034498 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5