BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482863
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38540.1 | Symbols: LP1, LTP1, ATLTP1 | lipid transfer prote... 1000 0.0
AT2G38530.1 | Symbols: LTP2, LP2, cdf3 | lipid transfer protein... 601 3e-171
> AT2G38540.1 | Symbols: LP1, LTP1, ATLTP1 | lipid transfer protein
1 | chr2:16130350-16131174 FORWARD LENGTH=706
Length=706
Score = 1000 bits (541), Expect = 0.0
Identities = 647/696 (93%), Gaps = 16/696 (2%)
Strand=Plus/Plus
Query 1 CTTCATCATCCATCACTACACACATCTCCTCTTGCAAACCAACATAAAACACTAACTAAG 60
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 1 CTTCATCATCCATCACTACACACATCTCCTATTGCAAACGAACATAAAACACTACCTAAG 60
Query 61 AGATCAATATGGCTGGAGTGATGAAGTTGGCATGCTTGGTCTTGGCCTGCATGATTGTGG 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 AGATCAATATGGCTGGAGTGATGAAGTTGGCATGCTTGCTCTTGGCCTGCATGATTGTGG 120
Query 121 CCGGCCCAATCACATCAAACGCGGCTCTAAGCTGTGGCTCAGTTAACAGCAACTTGGCAG 180
|||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 121 CCGGTCCAATCACATCGAACGCTGCGCTAAGCTGTGGCTCAGTTAACAGCAACTTGGCAG 180
Query 181 CGTGCATTGGCTACGTGCTCCAAGGTGGTACCATTCCCGCAGGGTGCTGCGCCGGTGTTA 240
||||||||||||||||||||||||||||| ||||||| ||| ||| ||| |||| ||||
Sbjct 181 CGTGCATTGGCTACGTGCTCCAAGGTGGTGTCATTCCCCCAGCGTGTTGCTCCGGCGTTA 240
Query 241 GAAACCTCAACAACATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTC 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAACCTCAACAGCATAGCCAAGACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTC 300
Query 301 AAGGTGCCGCTAGAGCCCTAGGCTCTGGTCTCAACGCTGGCCGTGCTGCTGGAATTCCTA 360
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AAGGTGCCGCTAGAGCCTTAGGCTCTGGTCTCAACGCTGGCCGTGCAGCTGGAATTCCTA 360
Query 361 AGGCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGA 420
Query 421 GGTGATGAGC-A--A--GGTCAGATGAAGCTACTAGCGGAAGTTTCGAATCCCTATTATA 475
|||||||||| | | ||| |||||| ||||||| |||||||||||||||| |||||||
Sbjct 421 GGTGATGAGCTAGCAACGGTGAGATGATGCTACTACCGGAAGTTTCGAATCCTTATTATA 480
Query 476 TAATGGATGAGATTAATATTAAATAAGATGTTCGAATGGTTGTTTTTAGAGTTTTTAATT 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 TAATGGATGAGATTAATATTAAATAAGATGTTCGAATGTTTGTTTTTAGAGTTTTTAATT 540
Query 536 TCTTGTCTTTTTCTATTGTGATGTTCTTATTATGTG--TT-GTCTGTATTATGTTCGCAG 592
|||||||||||||||||||| ||||||| |||| || || ||||||| |||||||||||
Sbjct 541 TCTTGTCTTTTTCTATTGTGGTGTTCTTGTTATATGGGTTTGTCTGTACTATGTTCGCAG 600
Query 593 --A-CAACTTTATATAAAATTTCAGA---CTTGAAGTTTAAGTTATTCTATATTCTTACT 646
| |||| |||||| |||||||||| ||||||||||||||| |||||||||||||||
Sbjct 601 GCAACAACGTTATATGAAATTTCAGAGTACTTGAAGTTTAAGTTTTTCTATATTCTTACT 660
Query 647 AATTAAAGCTTTTGCATTAGTTTAATCGATATGAAA 682
|||||| ||| |||||||||||||||||||||||
Sbjct 661 TATTAAATCTT--GCATTAGTTTAATCGATATGAAA 694
> AT2G38530.1 | Symbols: LTP2, LP2, cdf3 | lipid transfer protein
2 | chr2:16128378-16129158 FORWARD LENGTH=670
Length=670
Score = 601 bits (325), Expect = 3e-171
Identities = 544/645 (84%), Gaps = 33/645 (5%)
Strand=Plus/Plus
Query 11 CATCACTACA-CACATCTCCTCTTGCAAACCAACATAAAACACTAACTAAGAGATCAATA 69
||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 46 CATCA-TCCATCACATCTCCTCTTGCAAACCAACGTAAAACACTAACTAAGAGATCAATA 104
Query 70 TGGCTGGAGTGATGAAGTTGGCATGCTTGGTCTTGGCCTGCATGATTGTGGCCGGCCCAA 129
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||
Sbjct 105 TGGCTGGAGTGATGAAGTTGGCATGCATGGTCTTGGCTTGCATGATTGTGGCCGGTCCAA 164
Query 130 TCACATCAAACGCGGCTCTA--AGCTGTGGCTCAGTTAACAGCAACTTGGCAGCGTGCAT 187
||||| | |||||| || || || |||||| | || ||| ||||| |||||| ||||||
Sbjct 165 TCACAGCGAACGCG-CT-TATGAGTTGTGGCACCGTCAACGGCAACCTGGCAGGGTGCAT 222
Query 188 TGGCTACGTG-CTCCAAGGTGGTACCA-TTCCCGCA-GGGTGCTGCGCCGGTGTTAGAAA 244
|| |||| || | || ||||| | ||| || || || ||||||||| ||| |||| ||
Sbjct 223 TGCCTACTTGAC-CCGAGGTGCT-CCACTTACC-CAAGGGTGCTGCAACGGCGTTACTAA 279
Query 245 CCTCAACAACATAGCCAAG-ACGACCCCAGACCGTCAGCAAGCTTGCAATTGCATTCAAG 303
||| || ||||| |||| | || |||||||||||||||||||||||| |||| |||||
Sbjct 280 CCTTAAAAACATGGCCA-GTACAACCCCAGACCGTCAGCAAGCTTGCCGTTGCCTTCAAT 338
Query 304 GTGCCGCTAGAGCCCTAGG-CTCTGGTCTCAACGCTGGCCGTGCTGCTGGAATTCCTAAG 362
|||||||| |||| | || | | ||||||||| ||| |||||| |||||| |||||| |
Sbjct 339 CTGCCGCTAAAGCCGTTGGTCCC-GGTCTCAACACTGCCCGTGCAGCTGGACTTCCTA-G 396
Query 363 -GCATGTGGAGTCAATATTCCTTACAAAATCAGCACCAGCACCAACTGCAAAACCGTGAG 421
||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 397 CGCATGCAAAGTCAATATTCCTTACAAAATCAGCGCCAGCACCAACTGCAACACCGTGAG 456
Query 422 GTGATGAGCAA-GGTCAGATGAAGCTACTAGCGGAAGTTTCGAATCCCTATTATATAATG 480
||||||||| | ||||| ||||||||||||||||| ||||||||| ||||||||||
Sbjct 457 GTGATGAGCGACGGTCAAATGAAGCTACTAGCGGATGTTTCGAAT----ATTATATAATC 512
Query 481 GATGAGATTAATATTAAATAA-GATGTTCGAATGGTTGTTTTTAGAGTTTTTAATTTCTT 539
|||||||| |||||||||||| ||||||||||||| ||| | |||| |||||| |
Sbjct 513 GATGAGAT-AATATTAAATAAAGATGTTCGAATGGCTGTACTC----TTTTCAATTTCCT 567
Query 540 GTCTTTTTCTATTGTGATGTT-CTTATTATGTGTT-GTCTGTATTATGTTCGCAGACAAC 597
|||||||| ||| ||| ||| || |||||||| | ||||||| |||||||||| |||||
Sbjct 568 GTCTTTTTTTATCGTGGCGTTTCT-ATTATGTGATCGTCTGTACTATGTTCGCAAACAAC 626
Query 598 TTTATATAAAATTTCAGACTTGAAGTTTAAGTTATTCTATATTCT 642
|| | | || |||||||||||||||||||||||||||||| |||
Sbjct 627 GTTCTTTGAA-TTTCAGACTTGAAGTTTAAGTTATTCTATACTCT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33054068726
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5