BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482913
Length=1808
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38940.1 | Symbols: ATPT2, PHT1;4 | phosphate transporter 1;... 2540 0.0
AT3G54700.1 | Symbols: PHT1;7 | phosphate transporter 1;7 | chr... 1256 0.0
> AT2G38940.1 | Symbols: ATPT2, PHT1;4 | phosphate transporter
1;4 | chr2:16257228-16260225 FORWARD LENGTH=1900
Length=1900
Score = 2540 bits (1375), Expect = 0.0
Identities = 1595/1702 (94%), Gaps = 11/1702 (1%)
Strand=Plus/Plus
Query 41 CTCTCTCCTTTCTACACTCTTTTGACAATACTTAAAACACTTGCTCAGATCAAATCCTAC 100
|||||| |||||||||||||| ||||||||| |||||||||| |||||||| |||| ||
Sbjct 94 CTCTCT-CTTTCTACACTCTTCTGACAATAC-TAAAACACTTTATCAGATCAGATCCCAC 151
Query 101 ACAAACTCCTCTAGGAGAAGAAGAAGAGATGGCTAA-GGATCAATTACAAGTGTTGAATG 159
| ||||| |||| | | ||||||||| ||||| || ||| |||||||||||||||||||
Sbjct 152 ATAAACT-TTCTA-G-G-AGAAGAAGA-ATGGC-AAGGGAACAATTACAAGTGTTGAATG 205
Query 160 CACTTGACGTGGCCAAGACGCAATGGTACCATTTCACGGCGATCATTATCGCCGGAATGG 219
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 206 CACTTGACGTGGCCAAGACGCAATGGTACCATTTCACGGCGATCATAATCGCCGGAATGG 265
Query 220 GATTCTTCACTGACGCTTACGATCTCTTTTGCATCTCTCTCGTTACGAAGCTCCTCGGCC 279
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 266 GATTCTTCACTGATGCTTACGATCTCTTTTGCATCTCTCTCGTAACGAAGCTCCTCGGTC 325
Query 280 GTATTTATTACCACGTGGACGGCGCAGAAAAGCCTGGGACTCTCCCTCCCAATGTCGCAG 339
||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||
Sbjct 326 GTATTTATTACCACGTGGAAGGCGCACAAAAGCCTGGGACTCTCCCTCCCAACGTCGCAG 385
Query 340 CTGCCGTCAATGGCGTTGCTTTCTGTGGGACCCTCGCCGGTCAGCTCTTTTTTGGGTGGC 399
| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 386 CCGCCGTCAATGGCGTTGCCTTCTGTGGGACTCTCGCCGGTCAGCTCTTTTTCGGGTGGC 445
Query 400 TTGGTGACAAGCTCGGGAGGAAGAAGGTTTATGGTATGACGTTGATGGTCATGGTCCTTT 459
||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 446 TTGGTGATAAGCTCGGGAGGAAGAAAGTTTACGGTATGACGTTGATGGTCATGGTCCTTT 505
Query 460 GTTCAGTAGCCTCTGGTCTCTCTTTCGGACACGAGCCAAAAGCTGTAATGGCCACGCTCT 519
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 506 GTTCAATAGCCTCTGGTCTCTCTTTCGGACATGAGCCAAAAGCTGTGATGGCCACGCTCT 565
Query 520 GtttttttCGGTTTTGGCTTGGATTTGGCATCGGCGGGGACTACCCTTTATCTGCAACGA 579
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |
Sbjct 566 GTTTTTTTCGGTTTTGGCTTGGATTTGGCATCGGTGGTGACTACCCTTTATCCGCAACCA 625
Query 580 TCATGTCTGAATATGCCAACAAGAAAACTCGCGGCGCCTTTGTCTCTGCGGTTTTCGCGA 639
|||||||||||||||| |||||||| |||||||| |||||||||||||||||||| || |
Sbjct 626 TCATGTCTGAATATGCGAACAAGAAGACTCGCGGAGCCTTTGTCTCTGCGGTTTTTGCTA 685
Query 640 TGCAAGGGTTTGGAATCATGGCTGGTGGTATTTTCGCTATTATAATTTCCTCTGCTTTTG 699
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TGCAAGGGTTCGGAATCATGGCTGGTGGTATTTTCGCTATTATAATTTCCTCTGCTTTTG 745
Query 700 AAGCTAAGTTCCCAGCCCCGGCCTATGCGGATGATGCCTTGGGATCCACGGTTCCTCAAG 759
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 746 AAGCTAAGTTTCCATCCCCGGCCTATGCGGATGATGCCTTGGGATCCACGATTCCTCAAG 805
Query 760 CTGATTTGGTATGGCGGATAATCCTGATGGTTGGTGCTATCCCAGCGGCAATGACATATT 819
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||
Sbjct 806 CTGATTTGGTATGGCGGATAATCCTGATGGCTGGTGCTATCCCTGCGGCTATGACGTATT 865
Query 820 ACTCGAGATCAAAGATGCCAGAGACCGCAAGATACACAGCTTTGGTTGCTAAAGATGCAA 879
|||| || || |||||||| ||||||||||| ||||| |||||||||||||| || ||||
Sbjct 866 ACTCAAGGTCGAAGATGCCTGAGACCGCAAGGTACACGGCTTTGGTTGCTAAGGACGCAA 925
Query 880 AGCAAGCGGCTTCAGACATGTCTAAGGTTTTGCAAATGGAGATAGAGCCAGAACAACAAA 939
|||| || ||||| ||||||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 926 AGCAGGCAGCTTCGGACATGTCTAAGGTTCTGCAAGTGGAGATAGAGCCAGAACAACAGA 985
Query 940 AAGTGGATGAGATCTCAAAGGAGAAGTCCAAGGCCTTTTCCTTGTTCTCAAAGGAATTCA 999
|| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 986 AATTGGAAGAGATCTCAAAGGAGAAGTCCAAGGCCTTTGGATTGTTCTCAAAGGAATTCA 1045
Query 1000 TGAGTCGCCATGGGCTTCATTTGCTAGGCACTACATCGACATGGTTCCTTCTCGACATCG 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1046 TGAGTCGCCATGGGCTTCATTTGCTAGGCACTACATCGACATGGTTCCTTCTCGACATTG 1105
Query 1060 CTTTCTACAGTCAAAACCTTTTTCAGAAAG-ATATTTTCAGCGCAATCGGGTGGATTCCT 1118
|||||||||||||||||||||| || |||| ||||||||||||| ||||| |||||||||
Sbjct 1106 CTTTCTACAGTCAAAACCTTTTCCA-AAAGGATATTTTCAGCGCGATCGGATGGATTCCT 1164
Query 1119 CCCGCAAAAAGCATGAACGCAATTCAAGAGGTTTTCAAGATCGCACGAGCACAGACGCTC 1178
||||| |||||||||||||||||||||||||||||||||| || || || || |||||
Sbjct 1165 CCCGCGCAAAGCATGAACGCAATTCAAGAGGTTTTCAAGATTGCCCGTGCGCAAACGCTA 1224
Query 1179 ATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACAGTTGCGTTCATTGACGTCATT 1238
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1225 ATCGCCTTGTGTAGCACGGTACCTGGTTACTGGTTCACAGTTGCGTTCATCGACGTCATT 1284
Query 1239 GGAAGATTCGCGATTCAAATGATGGGCTTCTTTTTCATGACGGTCTTTATGTTTGCTCTC 1298
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1285 GGAAGATTTGCGATTCAGATGATGGGTTTCTTTTTCATGACGGTCTTTATGTTTGCTCTG 1344
Query 1299 GCTATTCCTTACAACCACTGGACTCACAAAGAGAACCGAATCGGATTTGTTATCATGTAC 1358
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1345 GCTATTCCTTACAACCACTGGACTCACAAGGAGAACCGAATCGGATTTGTTATCATGTAC 1404
Query 1359 TCGTTAACATTCTTTTTCGCCAACTTCGGACCCAATGCTACAACCTTCGTTGTGCCGGCC 1418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1405 TCGTTAACATTCTTTTTCGCCAACTTTGGACCCAATGCTACAACCTTCGTTGTGCCGGCC 1464
Query 1419 GAGATCTTCCCAGCCAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGCAAA 1478
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1465 GAAATCTTCCCAGCCAGGTTCAGATCAACCTGCCACGGTATCTCTGCAGCATCAGGAAAA 1524
Query 1479 TTAGGAGCAATGGTTGGTGCGTTCGGATTCTTGTACTTGGCTCAGAGCCCAGACAAGAAC 1538
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1525 TTAGGAGCAATGGTTGGTGCGTTCGGGTTCTTGTACTTGGCTCAGAACCCAGACAAGGAC 1584
Query 1539 AAGACGGACGCAGGATACCCTCCAGGGATTGGAGTCAGGAACTCGCTTATTGTGTTGGGT 1598
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1585 AAGACCGACGCAGGATACCCTCCAGGGATTGGGGTCAGGAACTCGCTTATTGTGTTGGGT 1644
Query 1599 GTGGTTAACTTCTTAGGTATTCTCTTCACTTTCTTGGTGCCTGAATCTAAAGGGAAGTCG 1658
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1645 GTAGTTAACTTCTTAGGTATCCTCTTCACTTTCTTGGTACCTGAATCTAAAGGTAAGTCA 1704
Query 1659 CTAGAGGAAATGTCCGGTGAAAATGAAGACAATGAGAATAGCATCAGTGATAATAGAACG 1718
|| |||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 1705 CTCGAGGAAATGTCCGGTGAAAATGAAGACAATGAGAATAGCAACAATGATAGTAGAACG 1764
Query 1719 GTCCCAATAGTTTAGGTGATAT 1740
||||||||||||||||||||||
Sbjct 1765 GTCCCAATAGTTTAGGTGATAT 1786
> AT3G54700.1 | Symbols: PHT1;7 | phosphate transporter 1;7 | chr3:20248425-20250070
REVERSE LENGTH=1646
Length=1646
Score = 1256 bits (680), Expect = 0.0
Identities = 1293/1587 (81%), Gaps = 50/1587 (3%)
Strand=Plus/Plus
Query 138 GATCAATTACAA-GTGTTGAATGCACTTGACGTGGCCAAGACGCAATGGTACCATTTCAC 196
|||||| || || ||| | || ||||| ||||| ||||| ||||||||||||||||||||
Sbjct 10 GATCAACTA-AACGTGCTAAACGCACTCGACGTCGCCAAAACGCAATGGTACCATTTCAC 68
Query 197 GGCGATCATTATCGCCGGAATGGGATTCTTCACTGACGCTTACGATCTCTTTTGCATCTC 256
|||||| || ||||||||||||||||||||||| ||||||||||| || ||||| |||||
Sbjct 69 GGCGATTATAATCGCCGGAATGGGATTCTTCACCGACGCTTACGACCTTTTTTGTATCTC 128
Query 257 TCTCGTTACGAAGCTCCTCGGCCGTATTTATTACCACGTGGACGGCGCAGAAAAGCCTGG 316
||||| || ||||| || ||||||||||| || |||||||||||| |||| ||||| ||
Sbjct 129 ACTCGTCACAAAGCTTCTTGGCCGTATTTACTATCACGTGGACGGCTCAGAGAAGCCAGG 188
Query 317 GACTCTCCCTCCCAATGTCGCAGCTGCCGTCAATGGCGTTGCTTTCTGTGGGACCCTCGC 376
|| || || || || ||| |||| || || ||||| || || ||||| || || |||||
Sbjct 189 AACGCTGCCACCAAACGTCTCAGCCGCTGTTAATGGAGTCGCCTTCTGCGGTACACTCGC 248
Query 377 CGGTCAGCTCTTTTTTGGGTGGCTTGGTGACAAGCTCGGGAGGAAGAAGGTTTATGGTAT 436
|| |||||||| ||||| ||||| ||||||||||| |||||||| || ||||| |||||
Sbjct 249 AGGCCAGCTCTTCTTTGGCTGGCTCGGTGACAAGCTTGGGAGGAAAAAAGTTTACGGTAT 308
Query 437 GACGTTGATGGTCATGGTCCTTTGTT-CAGTAGCCTCTGGTCTCT-CTTTCGGACACGAG 494
||| | ||||||||||| ||||||| || | || || ||||| | |||| ||| |
Sbjct 309 GACCCTCATGGTCATGGTTCTTTGTTCCA-TCGCTTCGGGTCTATCCTTTGGGA-GTAAC 366
Query 495 CCAAAAGCTGTAATGGCCACGCTCTGtttttttCGGTTTTGGCTTGGATTT-GGCATCGG 553
|||||| | || ||| | || || ||||| || ||||| |||||||| ||| ||||| ||
Sbjct 367 CCAAAAACAGTGATGACTACACTATGTTTCTTCCGGTTCTGGCTTGG-TTTCGGCATTGG 425
Query 554 CGGGGACTACCCTTTATCTGCAACGATCATGTCTGAATATGCCAACAAGAAA-ACTCGCG 612
|| || || || ||||| || ||||| ||||||||||| || || || ||| || || |
Sbjct 426 TGGTGATTATCCGTTATCCGCCACGATTATGTCTGAATACGCTAATAA-AAAGACCCGTG 484
Query 613 GCGCCTTTGTCTCTGCGGTTTTCGCGATGCAAGGGTTTGGAATCATGGCTGGTGGTATTT 672
| || ||| | | || ||||| || |||||||||||||||||| || | || || ||||
Sbjct 485 GTGCGTTTATAGCCGCCGTTTTTGCTATGCAAGGGTTTGGAATCTTGACCGGGGGGATTT 544
Query 673 TCGCTATTATAATTTCCT-CTGCTTTTGAAGCTAAGTTCCCAGCCCCGGCCTATGCGGAT 731
| || || || | | || | ||||| || ||||| || ||||| || ||||| | ||
Sbjct 545 TTGCCATCATCGTGT-CTGCCGCTTTCGAGGCTAAATTTCCAGCTCCAACCTAT-CAAAT 602
Query 732 -GATGCCTTGGGATCCACGGTTCCTCAAGCTGATT-TGGTATGGCGGATAATCCTGATGG 789
|||||||||| ||||||||||||||| || |||| | || |||||||| || |||||||
Sbjct 603 AGATGCCTTGGCATCCACGGTTCCTCAGGCGGATTAT-GTGTGGCGGATCATACTGATGG 661
Query 790 TTGGTGCTATCCCAGCGGCAATGACATATTACTCGAGATCAAAGATGCCAGAGACCGCAA 849
| |||||| | || || || ||||| |||||||| || || |||||||| ||||| ||
Sbjct 662 TGGGTGCTTTGCCTGCAGCGATGACGTATTACTCAAGGTCCAAGATGCCTGAGACTGCCC 721
Query 850 GATACACAGCT-TTGGTTGCTAAAGATGC-AAAGCAAGCGGCTTCAGACATGTCTAAGGT 907
| ||||| ||| || || || || || || ||| | |||||||||| |||||||||||||
Sbjct 722 GGTACACGGCTCTT-GTGGCCAAGGACGCGAAA-CTAGCGGCTTCAAACATGTCTAAGGT 779
Query 908 TTTGCAAATGGAGATAG-AGCCAGAACAACAAAAAGTGGATGAGATCTCAAAGGAGAAGT 966
||||||| ||||||| | || |||| || | | || || | || || || ||||
Sbjct 780 TTTGCAAGTGGAGATCGAAG-CAGAGCAGC----A--GG--GA-A-CT-GAA-GATAAGT 826
Query 967 CCAAGGCCTTTTCCTTGTTCTCAAAGGAATTCATGAGTCGCCATGGGCTTCATTTGCTAG 1026
|||| ||||| |||||| || ||||||||||||| |||||||| |||||||||||||
Sbjct 827 CCAATTCCTTTGGCTTGTTTTCCAAGGAATTCATGAAACGCCATGGCCTTCATTTGCTAG 886
Query 1027 GCACTAC-ATCGACATGGTTCCTTCTCGACATCGCTTTCTACAGTCAAAACCTTTTTCAG 1085
| ||||| | | ||||||||||| ||||||||||| ||||||||||| ||||| || |||
Sbjct 887 GAACTACAAGC-ACATGGTTCCTACTCGACATCGCCTTCTACAGTCAGAACCTATTCCAG 945
Query 1086 AAAGATATTTTCAGCGCAATCGGGTGGATTCCTCCCGCAAAAAGC-ATGAACGCAATTCA 1144
||||||||||||||||||||||| ||||| ||||| || | | | ||||||||||||||
Sbjct 946 AAAGATATTTTCAGCGCAATCGGATGGATCCCTCCGGCTCAGA-CAATGAACGCAATTCA 1004
Query 1145 AGAGGTTTTCAAGATCGCACGAGCACAGACGCTCATCGCCTTGTGTAGCACGGTACCTGG 1204
||||||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||
Sbjct 1005 AGAGGTTTTCAAGATTGCACGTGCACAAACCCTAATCGCCTTGTGTAGCACGGTACCTGG 1064
Query 1205 TTACTGGTTCACAGTTGCGTTCATTGACGTCATTGGAAGATTCGCGATTCAAATGATGGG 1264
||||||||||||||| || || |||||||||||||| ||||| ||||| || ||||||||
Sbjct 1065 TTACTGGTTCACAGTGGCCTTTATTGACGTCATTGGTAGATTTGCGATACAGATGATGGG 1124
Query 1265 CTTCTT-TTTCATGACGGTCTTTATGTTTGCTCTCGCTATTCCTTACAACCACTGGACTC 1323
||||| ||| ||||| ||||||||||| |||||||| ||||||||| |||| |||||||
Sbjct 1125 TTTCTTCTTT-ATGACCGTCTTTATGTTCGCTCTCGCCATTCCTTACGACCATTGGACTC 1183
Query 1324 ACAAAGAGAACCGAATCGGATTTGTTA-TCATGTACTCGT-TAACATTCTTTTTCGCCAA 1381
|||| |||||| |||||||||| ||| | |||||||| | |||||||||| ||||||||
Sbjct 1184 ACAAGGAGAACAGAATCGGATTCGTTGCT-ATGTACTC-TCTAACATTCTTCTTCGCCAA 1241
Query 1382 CTTCGGACCCAATGCTACAACCTTCGTTGTGCCGGCCGAGATCTTCCCAGCCAGGTTCAG 1441
||| ||||| ||||| ||||| ||||||||||| || ||||||||||| || ||||| ||
Sbjct 1242 CTTTGGACCTAATGCAACAACTTTCGTTGTGCCCGCTGAGATCTTCCCGGCTAGGTTTAG 1301
Query 1442 ATCAACCTGCCACGGTATCTCTGCAGCATCAGGCAAATTAGGAGCAATGGTTGGTGCGTT 1501
|||||||||||| || || || || || || || ||||||||||||||||||||||||||
Sbjct 1302 ATCAACCTGCCATGGAATTTCCGCGGCTTCTGGAAAATTAGGAGCAATGGTTGGTGCGTT 1361
Query 1502 CGGATTCTTGTACTTGGCTCAGAGCCCAGACAAGAACAAGACGGACGCA-GGATACCCTC 1560
|| ||||||||||| || || || || ||||||| |||||| || ||| ||||| ||||
Sbjct 1362 TGGGTTCTTGTACTTAGCACAAAGTCCTGACAAGACCAAGACAGA-GCATGGATATCCTC 1420
Query 1561 CAGGGATTGGAGTCAGGAACTCGCTTATTGTGTTGGGTGTGGTTAA-CTTCTTAGGTATT 1619
|||| |||||||||| |||||| || ||||| |||||||||||||| ||| || || ||
Sbjct 1421 CAGGTATTGGAGTCAAGAACTCCCTCATTGTTTTGGGTGTGGTTAATCTT-TTGGGGATG 1479
Query 1620 CTCTTCACTTTCTTGGTGCCTGAATCTAAAGGGAAGTCGCTAGAGGAAATGTCCGGTGAA 1679
| || || | ||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 1480 GTTTTTACACTGTTGGTTCCTGAATCTAAAGGCAAGTCTCTCGAGGAAATGTCCGGTGAG 1539
Query 1680 AATGAAGACAATGA-GAATAGCATCAG 1705
|| ||| | ||||| ||| |||| |||
Sbjct 1540 AACGAACAAAATGATGAA-AGCAGCAG 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89457371190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5