BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482920 Length=1228 Score E Sequences producing significant alignments: (Bits) Value AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsi... 1906 0.0 > AT2G39010.1 | Symbols: PIP2E, PIP2;6 | plasma membrane intrinsic protein 2E | chr2:16291477-16294034 FORWARD LENGTH=1245 Length=1245 Score = 1906 bits (1032), Expect = 0.0 Identities = 1158/1217 (95%), Gaps = 15/1217 (1%) Strand=Plus/Plus Query 17 tctctctcttctctctc-tctctcAGTCCGTG-AGGCTAAACCTGAAACAATGACGAAAG 74 |||||||| ||||| || | | | |||||||| ||||||| |||||| ||||||||| | Sbjct 39 TCTCTCTC-TCTCTTTCTTTTTTGAGTCCGTGAAGGCTAAGTCTGAAAGAATGACGAAGG 97 Query 75 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 98 ATGAGTTGACGGAGGAAGAGTCGCTCTCCGGCAAGGACTACTTAGACCCACCGCCTGTGA 157 Query 135 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 158 AGACGTTCGAGGTGAGAGAGCTCAAGAAGTGGTCCTTCTACAGAGCTGTCATCGCTGAGT 217 Query 195 TCATAGCTACTTTCCTCTTTCTATATGTCACCGTTTTGACAGTCATCGGCTTTAAGAGCC 254 ||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| Sbjct 218 TCATAGCTACTTTGCTCTTTCTATACGTGACTGTTTTGACAGTCATCGGCTTTAAGAGCC 277 Query 255 AGACGGATACCAACGCTGGTGGTGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 314 |||| |||| |||||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 278 AGACTGATATCAACGCCGGCGGCGGAGCTTGTGCCAGTGTCGGCCTCCTAGGCATCTCTT 337 Query 315 GGGCCTTCGGTGGCATGATCTTCATCCTCGTCTATTGCACTGCCGGCATCTCTGGTGGAC 374 ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 338 GGGCCTTTGGTGGCATGATATTCATCCTCGTCTACTGCACTGCCGGCATCTCTGGTGGAC 397 Query 375 ACATTAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTGAGAG 434 |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 398 ACATCAATCCCGCGGTGACGTTTGGGCTATTCCTAGCTAGCAAGGTATCATTGGTTAGAG 457 Query 435 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGCGGAGTTGGTTTGGTGAAAG 494 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 458 CTGTGTCGTACATGGTGGCTCAGTGTCTCGGAGCCACTTGTGGAGTTGGTTTGGTGAAAG 517 Query 495 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGAAGGAT 554 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 518 TCTTCCAGTCGACTTATTACAACCGCTACGGTGGTGGAGCCAACATGCTCTCCGACGGAT 577 Query 555 ACAATGTTGGTGTAGGTGTTGGTGCGGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 614 |||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| Sbjct 578 ACAATGTTGGCGTTGGGGTTGGTGCTGAGATTATCGGCACTTTTGTCCTCGTCTACACCG 637 Query 615 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTGGCAC 674 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 638 TCTTCTCCGCTACCGACCCTAAGCGAAATGCCCGTGACTCTCACATTCCTGTATTAGCAC 697 Query 675 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 698 CATTGCCAATTGGATTTTCCGTGTTCATGGTTCATTTAGCCACAATTCCAATTACTGGCA 757 Query 735 CCGGAATTAATCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 794 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 758 CCGGAATAAACCCGGCTAGGAGTTTTGGAGCTGCCGTCATCTACAACAATCAAAAGGCTT 817 Query 795 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 854 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 818 GGGATGATCAGTGGATCTTCTGGGTCGGTCCATTTGTGGGTGCAGCCATTGCAGCATTTT 877 Query 855 ACCATCAGTTTGTGTTGAGAGCTGGCGCTATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 914 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 878 ACCATCAGTTTGTGTTGAGAGCTGGTGCAATGAAGGCCTATGGGTCAGTCAGGAGCCAGC 937 Query 915 TTCATGAGCTTCATGCTTAAATTTGATT-TTTCGAACTATCGAAGAGGTGAAGAATTCTT 973 |||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||| Sbjct 938 TTCATGAGCTCCATGCTTAAATTTG-TTATTTCGAACTAGCGAAGAGGTGAAGAATTCTT 996 Query 974 TGGGCCAAGATGGGAGAAAGGaaaaaaaa--GGGACCCAAATCATATAAAAGAAAAAACG 1031 ||||||| || ||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 997 TGGGCCAGGAAGGGAGGAAGGAAAAAAAAAAGGGACCCAAATCATATAAAAGAAAAAACG 1056 Query 1032 AATATTATTAAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1091 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1057 AATATTATTTAAGATGGTCGGTGAGTGACATTTACTGTGTCTTATTTGTGGCTTTGTGGG 1116 Query 1092 GGAGGTTTGAGTGTAACAATTTGTAACGTACAAGCCTCGTATGAATGTATGTGTTATTTG 1151 ||||||||| ||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1117 GGAGGTTTGTGTGTAACAATTTGTAACGTACAAGC-----A--A-TGTATGTGTTATTTG 1168 Query 1152 ATGCATATGATATTTTTATACCTACTTATTGATGATTCTATCTTTAATCAATAATCATTA 1211 ||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||| Sbjct 1169 ATGCATATGATATTTATATATCTACTTATTGATGATTCTATCTTTGATCAATCATCATTA 1228 Query 1212 TAACTTAAATTTCATAG 1228 ||||||||||||||||| Sbjct 1229 TAACTTAAATTTCATAG 1245 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60341055090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5