BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482946 Length=1176 Score E Sequences producing significant alignments: (Bits) Value AT2G39270.1 | Symbols: | P-loop containing nucleoside triphosp... 1724 0.0 AT2G39280.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 226 4e-58 > AT2G39270.1 | Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:16399972-16401671 FORWARD LENGTH=1162 Length=1162 Score = 1724 bits (933), Expect = 0.0 Identities = 1098/1176 (93%), Gaps = 18/1176 (2%) Strand=Plus/Plus Query 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCTTCAGGCCGGCGACGACGATGGCGAAGA 60 |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| Sbjct 1 TTCTTCTCTCCATGGCGGTTTCTCACCGTCTCCTCAGGCCGGCGACGACGACGATAAAGA 60 Query 61 ATACtctttcttctttcttaattaggtctatttcttcttcttcctcttcttcgtctGGGT 120 ||||| |||||||| |||| |||||||| || || || | |||||||||||||||| Sbjct 61 ATACTTTTTCTTCTCTCTTTATTAGGTC----TC-TC-TC-T--TCTTCTTCGTCTGGGT 111 Query 121 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCCGCGTCTCAGCTCGAGAAGTCTACGT 180 |||||||||||||||||||||||||||||||||| ||| ||||||||| |||| | | | Sbjct 112 CCTCGCTAGACCCCAAAATCGATCTGGAGGAGGCTGCGGCTCAGCTCGGGAAG--T-C-T 167 Query 181 CTACGTCTCCGTCTCCGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 240 | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 -T-CGTCTACGTCAACGTCTCCATACAAAGGCAGAAATTTCCACTGGGTGTTTCTTGGAT 225 Query 241 GTCCTGGTGTTGGTAAAGGAACGTATGCTTCACGTCTCTCTTCTCTCCTCGGCGTTCCTC 300 |||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 226 GTCCTGGTGTTGGTAAAGGAACCTATGCCTCTCGTCTCTCTTCTCTCCTCGGCGTTCCTC 285 Query 301 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGctctcctcctctggcctcctctcctctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 ATATTGCCACTGGTGATCTCGTTCGTGAAGAGCTCTCCTCCTCTGGCCTCCTCTCCTCTC 345 Query 361 AGCTGAAGGAGCTTGTTAACCATGGGAAATTGGTTCCTGATGAATTCATAATAAGTTTGT 420 |||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 346 AGCTCAAGGAGCTTGTTAACCATGGAAAACTAGTTCCTGATGAATTCATAATAAGTTTGT 405 Query 421 TATCAAAGCGTCTCCAAGCTGGCAAAGAGAAGGGTGAATCTGGATACATTCTTGATGGTT 480 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 406 TATCAAAGCGTCTCCAAGCTGGCAAAGACAAGGGTGAATCTGGATACATTCTTGATGGTT 465 Query 481 TTCCACGAACCGTGACACAAGCGGAAATACTGGAGGGGGTAACTAATATCGATCTGGTGA 540 ||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 466 TTCCACGCACCGTGACTCAAGCGGAAATACTGGAGGGAGTAACTAATATCGATCTGGTGA 525 Query 541 TCAACCTGAAGCTTCGAGAAGAGGCACTACTTGCCAAATGTTTAGGAAGAAGAATTTGCA 600 | ||||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 526 TTAACCTGAAGCTACGAGAAGAGGCATTGCTTGCGAAATGTTTAGGAAGAAGAATTTGCA 585 Query 601 GTGAGTGTGGTGCAAACTATAACGTTGCGTGCATTGATATCGAAGGTGATGATGATAGTC 660 | |||||||||| ||||||||||||||| |||||||||||| ||||||||||||||| || Sbjct 586 GCGAGTGTGGTGGAAACTATAACGTTGCCTGCATTGATATCAAAGGTGATGATGATACTC 645 Query 661 CCAGAATGTACATGCCTCCTCTTCTTCCTCCGCCAAACTGTGCATCGAAGCTTATAAGCC 720 |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 646 CCAGAATGTATATGCCTCCTCTTCTTCCTCCGCCAAACTGTGAATCGAAGCTTATAAGCC 705 Query 721 GAGCTGATGACACCGAAGACGTTGTCAAGGAAAGACTCCGGATTTACAACAAAATGACTC 780 ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 706 GAGCTGATGACACTGAAGAAGTTGTCAAGGAAAGACTCAGGATTTACAACAAAATGACTC 765 Query 781 TACCAGTGGAGGAATTCTACAAGAAGCGCAGGAAGCTATTGGAATTTGAATTACCCGGTG 840 |||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||||| Sbjct 766 AACCAGTGGAGGAATTCTACAAGAAACGCGGGAAGCTGTTGGAATTTGAATTGCCCGGTG 825 Query 841 GAATTCCAGAGTCATGGCCAAGGCTCCTTAGAGCATTACACCTTGAAAACGATAAACAGT 900 |||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||| Sbjct 826 GAATCCCAGAGTCATGGGCAAGGCTCCTTAGGGCATTACACCTTGAAGACGATAAACAGT 885 Query 901 CTGCAATAGCCTAATTTCTCTCGGCATTGTATGATTGAATCAAACAGCTTGTACTACATT 960 ||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct 886 CTGCAATAGCCTAATCTCTCTCTGCATTTTATGATTGAATCAAACAACTTGTACTACATT 945 Query 961 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 946 CTTTGCTCGAGTAATCCTCCTCGTGCATATATGCTTAAGATAGTCAATAAAAGAGATACA 1005 Query 1021 TGTCCCTTTGTGGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGG 1080 |||||| | |||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 1006 TGTCCCACTATGGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGG 1065 Query 1081 TCCACTATAGATAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAAT 1140 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1066 TCCACTATAGATAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAAT 1122 Query 1141 TGTTTCTATATGCTTACCaaaaaaaTTATGTAATTC 1176 ||||| ||||||||||||||| |||||||||||||| Sbjct 1123 TGTTTATATATGCTTACCAAAGAAATTATGTAATTC 1158 > AT2G39280.2 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily protein | chr2:16401526-16406854 REVERSE LENGTH=2846 Length=2846 Score = 226 bits (122), Expect = 4e-58 Identities = 138/145 (95%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 1032 GGTTATTTGATGCATATATTATATAGTAAAGTTTCTTTGTGGATTCTGGTCCACTATAGA 1091 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 2846 GGTTATTTGATGCATATATTATATAGTGAAGTTTCTTTGTGGCTTCTGGTCCACTATAGA 2787 Query 1092 TAGTTGAAAACTCTTTGTCATACAAACAGAGGTTTGACTTACAACGAATTGTTTCTATAT 1151 |||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||| Sbjct 2786 TAGTTGAAAACTCTTTGTCATA-A--CAGAGGTTTGACTTACAACGAATTGTTTATATAT 2730 Query 1152 GCTTACCaaaaaaaTTATGTAATTC 1176 |||||||||| |||||||||||||| Sbjct 2729 GCTTACCAAAGAAATTATGTAATTC 2705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57730626750 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5