BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg482966
Length=1336
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family pr... 2211 0.0
> AT2G39450.1 | Symbols: MTP11, ATMTP11 | Cation efflux family
protein | chr2:16471632-16473818 REVERSE LENGTH=1380
Length=1380
Score = 2211 bits (1197), Expect = 0.0
Identities = 1269/1304 (97%), Gaps = 3/1304 (0%)
Strand=Plus/Plus
Query 35 ccggaaaaaTGGTTGAGCCAGCTAGTCAAGATTCCGACGAAGGGATCTCGCTGCTCGAGT 94
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 76 CCGGAAAAATGGTTGAGCCAGCTAGTCCAGATTCCGACGAAGGGATCTCGCTGCTCGAGT 135
Query 95 TTCACGGTAACGGTGACCGTTCCTGGCAGTTAAATTTCGATGATTTCCAGGTTTCACAGG 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 136 TTCACGGTAACGGTGACCGTTCCTGGCAGTTAAATTTCGATGATTTCCAGGTTTCACCGG 195
Query 155 AGCACAAGGAGAAGAAGA-CTCCGAGTAAACTACACAACTGTCTTGGTTGTTTGGGTCCG 213
| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 196 AACACAAGGAGAAGAA-ATCTCCGAGTAAACTACACAACTGTCTTGGTTGTTTGGGTCCG 254
Query 214 GAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGGTTTACTGAA 273
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 255 GAAGACAATGTGGCAGATTATTACCAGCAGCAAGTAGAGATGCTTGAGGGCTTTACTGAA 314
Query 274 ATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGGAAGAGCAGGATAAT 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 ATGGATGAACTTGCAGAACGTGGCTTTGTTCCTGGAATGTCAAAGGAAGAGCAGGATAAT 374
Query 334 TTGGCTAAAAGCGAGACATTGGCGATTAGAATATCAAACATTGCAAACATGCTTCTTTTT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TTGGCTAAAAGCGAGACATTGGCGATTAGAATATCAAACATTGCAAACATGCTTCTTTTT 434
Query 394 GCTGCTAAAGTCTATGCTTCTGTCACAAGTGGCTCTTTAGCAATCATTGCTTCTACATTG 453
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 435 GCTGCTAAAGTCTATGCTTCTGTCACTAGTGGCTCTTTAGCTATCATTGCCTCTACATTG 494
Query 454 GACTCTCTTCTTGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GACTCTCTTCTTGATCTTCTTTCTGGCTTCATCCTCTGGTTTACCGCCTTCTCCATGCAG 554
Query 514 ACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGGGAATCCTA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 ACACCCAACCCGTATCAGTATCCCATTGGCAAGAAACGCATGCAACCACTGGGAATCCTA 614
Query 574 GTCTTTGCATCAGTGATGGCAACACTTGGATTGCAGATTATCTTGGAATCTCTTCGCACC 633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTCTTTGCATCAGTGATGGCAACACTTGGATTGCAGATTATCTTGGAATCTCTTCGCACA 674
Query 634 ATGTTATCCAGCCACAAGGAGTTCAACCTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 675 ATGTTATCCAGCCACAAGGAGTTCAACCTAACAAAAGAGCAAGAGAGTTGGGTAGTTGGG 734
Query 694 ATCATGCTTTCTGTTACATTGGTCAAACTGCTTCTGGTTCTTTACTGCAGATCCTTCACT 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ATCATGCTTTCTGTTACATTGGTCAAACTGCTTCTGGTTCTTTACTGCAGATCCTTCACT 794
Query 754 AACGAGATCGTTAAAGCTTATGCTCAAGATCACTTCTTCGACGTCATCACAAACATCATT 813
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 795 AACGAGATCGTTAAAGCTTATGCTCAAGATCATTTCTTCGACGTCATCACAAACATCATT 854
Query 814 GGACTCATTGCAGTAATCCTTGCCAATTACATCGACGATTGGATTGATCCCGTTGGAGCT 873
|||||||||||||||||||| ||||||||||| || ||||||||||||| |||||||||
Sbjct 855 GGACTCATTGCAGTAATCCTGGCCAATTACATTGATTATTGGATTGATCCAGTTGGAGCT 914
Query 874 ATCATTCTTGCATTATACACGATACGGACATGGTCAATGACGGTATTGGAGAACGTGAAC 933
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 915 ATCATTCTTGCATTATACACAATACGGACATGGTCAATGACGGTCTTGGAGAACGTTAAC 974
Query 934 TCTCTTGTTGGGAAATCAGCTAGACCAGAGTATCTGCAGAAACTAACTTACCTGTGTTGG 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TCTCTTGTTGGGAAATCAGCTAGACCAGAGTATCTGCAGAAACTAACTTACCTGTGTTGG 1034
Query 994 AACCACCATAAAGCAATTAGGCACATTGATACAGTCAGGGCTTACACGTTTGGCTCTCAT 1053
|||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 1035 AACCACCATAAAGCCATTAGGCACATTGACACAGTGAGGGCATACACATTTGGCTCTCAT 1094
Query 1054 TATTTTGTGGAGGTTGACATTGTTCTCCCAGCTGACATGCCTCTGCAAGCGGCTCACGAC 1113
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1095 TATTTTGTGGAGGTTGATATTGTTCTCCCAGCTGACATGCCTCTGCAAGTGGCTCACGAC 1154
Query 1114 ATTGGAGAATCGCTGCAAGAGAAGCTCGAGCTGCTAGAGGAGATCGAACGGGCTTTTGTG 1173
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1155 ATTGGAGAATCGCTGCAAGAGAAGCTCGAGCTACTAGAGGAGATCGAACGGGCTTTTGTG 1214
Query 1174 CATCTTGATTATGAGTACACTCACAAACCCGAGCACGCTAGATCCCACCGTTAGCTGTTT 1233
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1215 CATCTTGATTATGAGTACACTCACAAACCTGAGCACGCTAGATCCCACTGTTAGCTGTTT 1274
Query 1234 CTCCTTTTCAA-GTTCTCTACGTTTCTAAATCTTTACAAATTAATCTTCACTGTATTGTT 1292
||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1275 ATCCTTTTTAAAGATCTCTACGTTTCTATATCTTTACAAATTAATCTTCACTGTATTGTT 1334
Query 1293 GTTTAGTAGACAATTGTGAGATAAAGGAGTACCTTTGTAACTAT 1336
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1335 GTTTAGTAGACAATTGTGAGATAAAGGAATACCTTTGTAACTAT 1378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65762713950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5