BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg482968 Length=1014 Score E Sequences producing significant alignments: (Bits) Value AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:164762... 1147 0.0 > AT2G39470.1 | Symbols: PPL2 | PsbP-like protein 2 | chr2:16476216-16477843 FORWARD LENGTH=1026 Length=1026 Score = 1147 bits (621), Expect = 0.0 Identities = 729/779 (94%), Gaps = 15/779 (2%) Strand=Plus/Plus Query 236 CTTACCAAAAAGGCAGCGGAAGCAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 295 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 262 CTTACCAAAAAGGCAGCGGAAACAATTGGAAGAGAAGGCAAGCTCTTGTGGGAGTAGGAA 321 Query 296 CCTTAGTGGCAACTTCAATTCCAGCAGCTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 355 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 322 CTTTAGTGGCAACTTCAATTCCAGCAACTTTGCTTCTTGCTGAAGAGATACCAAAAAGCT 381 Query 356 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTATTATTACCCATCAGACTGGAGGG 415 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 382 ACTCGCCTTTTGTGGATCGAGAAGACGGGTATTCTTACTATTACCCATCAGACTGGAGGG 441 Query 416 AATTTGACTTCAGGGCGCACGATTCAGCCTTCAAAGATAGATACCTGCAACTGCAGAATG 475 |||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||| Sbjct 442 AATTTGACTTCAGGGCACATGATTCAGCCTTCAAAGATAGATACTTGCAACTGCAGAATG 501 Query 476 TGCGGGTCAGGTTCATACCAACCGAGAAAAACGACATCCGTGAAGTAGGTCCTATGGAAG 535 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 502 TGCGGGTCAGGTTCATACCAACGGAGAAAAACGACATCCATGAAGTAGGTCCTATGGAAG 561 Query 536 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACTATCT 595 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 562 AGGTGGTTTATGATCTAGTGAAGCATAAGTTTGCAGCACCAAACCAAGTAGCTACCATCT 621 Query 596 ACGATATGAAAGAGAGGGTGGAAGATGGAAGGAACTATTACACGTTTGAGTATGGACTAA 655 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 622 ACGATATGAAAGAGAGGGTGGAAGATGGAAAGAACTATTACACGTTTGAGTATGGACTAA 681 Query 656 GAACTCCCATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 715 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 GAACTCCTATCTATGCAACCACTTCCTTTGCAACAGTGGCAGTTGGAAACAACAGATACT 741 Query 716 ATACACTCATAGTTGGAGCAAATGAGAGGAGGTGGAGGAAAGTGAAAAAGCAACTTCAAG 775 | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 742 ACACTCTCATAGTTGGAGCAAATGAGAGAAGGTGGAGGAAAGTGAAAAAGCAGCTTCAAG 801 Query 776 TTGTGGCTGACTCTTTGAAGATCCTTGAGATTTGACAAACACAAGAAACATCTTTATGTT 835 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct 802 TTGTGGCCGACTCTTTGAAGATCCTTCAGATTTGACAAACACAAGAAACATCTT-A---- 856 Query 836 ACTCCTATCTATCTTTCTCTCTCTGTGGTTACATAATTGTATGTAGATGACAATTTGATG 895 ||||||| |||||||||||||||||||||||| || ||| ||||||| |||||||||| Sbjct 857 -CTCCTATATATCTTTCTCTCTCTGTGGTTACAAAACTGTCTGTAGATAACAATTTGATA 915 Query 896 TATTCCCATCTTCTCCACAACTCCAACGATGTTTTTGGCATTGTGGCTTGTGAGTTGGAT 955 | ||| || ||||| | ||||||||||||| ||||||||||||| |||| ||| Sbjct 916 TTTTC--ATATTCTCTATAACTCCAACGATGGTTTTGGCATTGTG-------AGTTAGAT 966 Query 956 TTTGAGCTGGTTCAGTAATTGAATCAAACTTGCAAATAAAGTGCATATAATGTATTTAC 1014 | |||| ||||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct 967 TCTGAGTTGGTTCAGTAATTCAATCAAACTTGCAAATAAAGTGGAAATAATGTATTTAC 1025 Score = 283 bits (153), Expect = 2e-75 Identities = 215/242 (89%), Gaps = 15/242 (6%) Strand=Plus/Plus Query 1 ATCCACATGTTAATGAATGGAGAAG-CAAAGAAATGACGAAAATCAGAAATGTCTTATCC 59 ||||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| | Sbjct 1 ATCCACATGTTGATGAATGGAGAAGTCCGAGAAATGACGAAAATCAGAAATTTCTTAT-C 59 Query 60 ACACACAAGAACACTAAGGCAATGTTCATTGATCTCGTCTAAAGTCTTGTGAATTGTAGC 119 |||| ||||||||||||||||||||||||| || || |||||||||||||||||||| Sbjct 60 -CACA-TAGAACACTAAGGCAATGTTCATTGA--TCATCAAAAGTCTTGTGAATTGTAGC 115 Query 120 CATTATGGCAGCAGTCTCGTCACTCTCAATACGCTATGGT-G--TCTCACCAACAATCTC 176 || ||| | |||||||| ||||||||||| |||| |||| | |||||||||||||||| Sbjct 116 CACTAT-G--GCAGTCTCCTCACTCTCAATCCGCTGTGGTGGTTTCTCACCAACAATCTC 172 Query 177 CCACAAGACAGAGATTCTCTGTCCAAATCCATCACTCAAAGCTTGTT-T--ACTTTCATC 233 |||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 173 CCACAAGACAGAAATTCTCTGTCCAAATCCATCACTCAAAGCTTGTTGTTTACTTTCATC 232 Query 234 CG 235 || Sbjct 233 CG 234 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49681571383 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5