BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483004
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | Glucose... 2285 0.0
> AT2G39770.1 | Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 | Glucose-1-phosphate
adenylyltransferase family protein | chr2:16588702-16590985
FORWARD LENGTH=1491
Length=1491
Score = 2285 bits (1237), Expect = 0.0
Identities = 1405/1484 (95%), Gaps = 20/1484 (1%)
Strand=Plus/Plus
Query 1 TGCCTATCATTTTGCCAACGAACGTTCTTTCTGC---ATCACAGCTCAGCCTGACGCAAA 57
|||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 3 TGCCTATCATTTTGCCAACGAACGTTCTTTCTTCTTAATCACAGCTCAGCCTGACGC-AA 61
Query 58 CCGCTCAGGCTGATCTCTTCCATTTTACAGCCATTTCCCAGCTCAGATCTCTGATCCGGT 117
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 62 CCGCTCAGGCTGATCTCTTCCAATTTACAGCCATTTCCCAGCTCAGATCTCTGATCCGGT 121
Query 118 GAGATCTCTTTCAAGGGAAAGGAGTTAGAGCAT-A--AAGATGAAGGCACTCATTCTTGT 174
||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||
Sbjct 122 GAGATCTCTCTCAAGGAAAAGGAGTTAGAGCATCATCAAGATGAAGGCACTCATTCTTGT 181
Query 175 TGGAGGCTTCGGCACTCGGTTGAGGCCATTGACTCTCAGTTTCCCAAAGCCGCTCGTTGA 234
|||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||
Sbjct 182 TGGAGGCTTCGGCACTCGCTTGAGACCATTGACTCTCAGTTTCCCAAAGCCCCTTGTTGA 241
Query 235 TTTTGCAAATAAACCCATGATCCTTCATCAGATAGAGGCTCTTAAGGCAGTTGGAGTTGA 294
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTTTGCTAATAAACCCATGATCCTTCATCAGATAGAGGCTCTTAAGGCAGTTGGAGTTGA 301
Query 295 TGAAGTGGTTTTGGCCATCAATTACCAGCCAGAGGTGATGCTGAACTTCTTGAAGGACTT 354
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 302 TGAAGTGGTTTTGGCCATCAATTATCAGCCAGAGGTGATGCTGAACTTCTTGAAGGACTT 361
Query 355 TGAGACCAAGCTCGAAATCAAAATCACTTGCTCACAAGAGACCGAGCCACTAGGTACGGC 414
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 TGAGACCAAGCTGGAAATCAAAATCACTTGCTCACAAGAGACCGAGCCACTAGGTACCGC 421
Query 415 TGGTCCTCTGGCTCTAGCGAGAGACAAATTGGTTGATGGATCTGGAGAGCCCTTCTTTGT 474
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 422 TGGTCCTCTGGCTCTAGCGAGAGACAAATTGCTTGATGGATCTGGAGAGCCCTTCTTTGT 481
Query 475 TCTTAACAGTGATGTGATTAGTGAGTACCCACTTAAAGAAATGCTTGAGTTTCACAAAAC 534
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 482 TCTTAACAGTGATGTGATTAGTGAGTACCCTCTTAAAGAAATGCTTGAGTTTCACAAATC 541
Query 535 TCACGGCGGGGAAGCCTCCATAATGGTGACAAAGGTGGATGAACCGTCTAAATATGGAGT 594
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 542 TCACGGTGGGGAAGCCTCCATAATGGTAACAAAGGTGGATGAACCGTCGAAATATGGAGT 601
Query 595 GGTTGTTATGGAAGAAAGTACAGGAAAAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTA 654
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 602 GGTTGTTATGGAAGAAAGCACTGGAAGAGTGGAGAAGTTTGTGGAAAAGCCAAAACTGTA 661
Query 655 TGTAGGTAACAAGATCAACGCTGGGATTTATCTTCTGAACCCATCTGTTCTTGACAAGAT 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 662 TGTAGGTAACAAGATCAACGCTGGGATTTATCTTCTGAACCCATCTGTTCTTGATAAGAT 721
Query 715 TGAGCTAAGACCGACCTCGATCGAAAAAGAGACCTTCCCTAAGATTGCAGCAGCGCAAGG 774
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 TGAGCTAAGACCGACTTCAATCGAAAAAGAGACTTTCCCTAAGATTGCAGCAGCGCAAGG 781
Query 775 GCTCTATGCTATGGTCCTACC-GGGATTTTGGATGGACATTGGGCAACCCCGTGACTACA 833
||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 782 GCTCTATGCTATGGTGCTACCAGGG-TTTTGGATGGACATTGGGCAACCCCGTGACTACA 840
Query 834 TAACCGGTTTGAGACTCTACTTAGACTCCCTTAGAAAGAAATCTCCTGCCAAGTTAACCA 893
|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 841 TAACGGGTTTGAGACTCTACTTAGACTCCCTTAGGAAGAAATCTCCTGCCAAATTAACCA 900
Query 894 GTGGTCCACACATTGTTGGGAATGTTCTTGTTGATGAAACTGCTACGATTGGGGAAGGAT 953
|||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 901 GTGGGCCACACATAGTTGGGAATGTTCTTGTTGACGAAACCGCTACAATTGGGGAAGGAT 960
Query 954 GTTTGATTGGACCAGACGTTGCCATTGGTCCGGGATGCATTGTTGAGTCAGGAGTCAGGC 1013
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 961 GTTTGATTGGACCAGACGTTGCCATTGGTCCAGGCTGCATTGTTGAGTCAGGAGTCAGAC 1020
Query 1014 TCTCGCGATGCACGGTCATGCGTGGAGTCCGCATCAAGAAGCATGCATGTATCTCGAGCA 1073
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1021 TCTCCCGATGCACGGTCATGCGTGGAGTCCGCATCAAGAAGCATGCGTGTATCTCGAGCA 1080
Query 1074 GTATCATCGGGTGGCACTCAACGGTTGGACAATGGGCCAGGATTGAGAACATGACGATCC 1133
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1081 GTATCATCGGGTGGCACTCAACGGTTGGTCAATGGGCCAGGATCGAGAACATGACGATCC 1140
Query 1134 TTGGAGAAGATGTTCATGTGAGCGATGAGATCTATAGCAATGGAGGAGTTGTTTTACCAC 1193
| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1141 TCGGTGAGGATGTTCATGTGAGCGATGAGATCTATAGCAATGGAGGAGTTGTTTTGCCAC 1200
Query 1194 ACAAGGAGATCAAATCAAACATCTTGAAGCCAGAGATAGTGATGTGAAAAATGTGATATT 1253
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1201 ACAAGGAGATCAAATCAAACATCTTGAAGCCAGAGATAGTGATGTGAAAA-TGAGATATT 1259
Query 1254 ATATGTGCAACtttttttttttttttttgtgtcctttttttAACTTT-AAATCGCTTTCG 1312
||||||||||||||||||||||||||| ||||||||| || |||||| ||||||||||||
Sbjct 1260 ATATGTGCAACTTTTTTTTTTTTTTTT-GTGTCCTTTCTTCAACTTTGAAATCGCTTTCG 1318
Query 1313 TTATTCTTGTTGGCTTTTGAATAAGCAAGCATCAATCAAAACGCTGTATATCTTGTTAGA 1372
| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 TAATTCTTAATGGCTTTTGAATAAGCA----TCAATCAAAACGCTGTATATCTTGTTAGG 1374
Query 1373 GTCATTTGGTGTTTTGTCTCTTTTTGTATTT-GTAATTTATTAAAAC-T--ATTCTCAGT 1428
||| |||| |||||||||||||||| | ||| ||||||||| |||| | ||||||| |
Sbjct 1375 GTCGTTTGCTGTTTTGTCTCTTTTTTTGTTTTGTAATTTATAAAAAAATTTATTCTCATT 1434
Query 1429 TTATGTGAGATACTTTTGAATATTCATTAATTATAAAGCTTTTT 1472
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTATGTGAGATACTTTTGAATATTCATTAATTATAAAGCTTTTT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72589988070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5