BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483018
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39840.1 | Symbols: TOPP4 | type one serine/threonine protei... 1858 0.0
> AT2G39840.1 | Symbols: TOPP4 | type one serine/threonine protein
phosphatase 4 | chr2:16627258-16629289 FORWARD LENGTH=1443
Length=1443
Score = 1858 bits (1006), Expect = 0.0
Identities = 1210/1301 (93%), Gaps = 44/1301 (3%)
Strand=Plus/Plus
Query 31 ttt-ttttttGGGGTCGaaaaaaaTTAGGGtttttttttGTTTGG-TTCTGTTAATGGCG 88
||| ||||||||||||| ||||||||| |||||||||||| || ||||||| ||||||
Sbjct 124 TTTCTTTTTTGGGGTCG-AAAAAATTA-GGTTTTTTTTTG---GGATTCTGTTGATGGCG 178
Query 89 ACGACGACG-C-A---A-GGGCAGCAAACGGCGATTGACACGGCGGTTCTCGATGATATA 142
||||||||| | | | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 179 ACGACGACGACGACGCAGGGGCAGCAAACGGCGATTGACTCGGCGGTTCTCGATGATATA 238
Query 143 ATCAGGCGACTCACGGAGGTCCGGTTAGCTAGACCAGGAAAGCAAGTCCAGCTCTCGGAA 202
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ATCAGGCGACTCACGGAGGTCCGGTTAGCTAGACCAGGAAAGCAAGTCCAGCTCTCTGAA 298
Query 203 GCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTTCTTCAGCAACCCAATTTG 262
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 299 GCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTCCTTCAGCAACCCAATTTA 358
Query 263 CTTGAGCTTGAGGCTCCCATCAAAATCTGTGGTGACATACATGGGCAATATAGTGATCTG 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 CTTGAGCTTGAGGCTCCCATCAAAATCTGTGGTGACATACATGGGCAATATAGTGATTTG 418
Query 323 CTGAGGCTATTCGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTGGGGGAT 382
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TTGAGGCTATTTGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTTGGGGAC 478
Query 383 TATGTGGACCGAGGCAAACAGAGTCTTGAAACAATATGTCTCTTACTAGCTTACAAGATC 442
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATGTGGACAGAGGCAAACAGAGTCTTGAAACAATATGTCTCTTACTAGCTTACAAGATC 538
Query 443 AAATACCCTGGCAACTTTTTTCTACTAAGGGGAAACCACGAATGTGCTTCTATCAATCGG 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 539 AAATACCCTGGCAACTTTTTTCTACTAAGGGGAAACCACGAATGTGCTTCTATCAATAGG 598
Query 503 ATTTATGGGTTTTATGATGAATGTAAAAGGAGGTTCAATGTGAGGGTATGGAAGGTTTTC 562
|| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 599 ATATATGGATTTTATGATGAGTGTAAAAGGAGGTTCAATGTGAGAGTATGGAAGGTTTTT 658
Query 563 ACTGACTGTTTTAATTGCCTTCCTGTTGCGGCGCTTATAGATGACAAAATATTGTGTATG 622
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACTGATTGTTTTAACTGCCTTCCTGTTGCGGCGCTTATAGATGACAAAATATTGTGTATG 718
Query 623 CACGGTGGACTTTCGCCGGATCTTGACCATTTGGATGAGATTAGAAACTTGCCTCGTCCT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 719 CACGGTGGACTTTCGCCGGATCTTGACCATTTGGATGAGATTAGAAACTTGCCGAGACCA 778
Query 683 ACTATGATTCCTGACACCGGGCTTCTCTGTGATTTGCTCTGGTCTGATCCTGGGAAAGAT 742
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTATGATTCCGGATACCGGGCTTCTCTGTGATTTGCTCTGGTCTGATCCTGGGAAAGAT 838
Query 743 GTTAAAGGATGGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCTGATAAAGTT 802
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 GTTAAAGGATGGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTT 898
Query 803 TCCGAGTTTCTCACAAAACATGATTTAGACCTTGTGTGTCGTGCCCATCAGGTTGTGGAG 862
||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 899 TCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGGTCGTGGAG 958
Query 863 GATGGTTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTAC 922
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GATGGGTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTAC 1018
Query 923 TGTGGTGAATTTGATAATGCTGGTGCGATGATGAGCGTGGACGAGAACCTTATGTGCTCG 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGTGGTGAATTTGATAATGCTGGTGCGATGATGAGCGTGGACGAGAACCTTATGTGCTCG 1078
Query 983 TTTCAGATTTTGAAGCCCGCAGAGAAGAAGACCAAATTCATGATGTCCACAAAGATTTGA 1042
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1079 TTTCAGATTTTGAAGCCCGCTGAGAAGAAGACCAAGTTCATGATGTCCACAAAGATTTGA 1138
Query 1043 TCCTTTCATTGAGGTTAGTCAGTAG-TCTGTCCTTG-G---TTGAAACCAAACCATTGAA 1097
| ||||||||||| | | | | | ||| || ||| | |||| |||||||||||
Sbjct 1139 TACTTTCATTGAGATG-G--ATTTGGTCTTTC-TTGAGAAATTGATTG-AAACCATTGAA 1193
Query 1098 CATTTGGCTTTGAAGTGTGTACT---G--A-T------T---GGAAAGGAGCAAGACCTT 1142
|||||||| ||||||||||||| | | | | ||||||||||||||||||
Sbjct 1194 GATTTGGCTGTGAAGTGTGTACTTATGGTAGTGAGAACTCTTGGAAAGGAGCAAGACCTT 1253
Query 1143 ---AGTCTTCTAATCTCTTTCTTCCCC-AAATTCACTTTCTGCGTAtttttttCTATCTT 1198
|||||||||||||||||||||||| |||||||||||| || | ||||||||||||||
Sbjct 1254 CTTAGTCTTCTAATCTCTTTCTTCCCCCAAATTCACTTTCAGCAT-TTTTTTTCTATCTT 1312
Query 1199 CATTTTATGGGTTTTACATGATTTTCATCTGCCTGTTGAGATCACATAGTTGGTGTGTAC 1258
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1313 C-TTTTATGGGTTTTACATGATTTTCATCTGCCTGTTGGGATCACATAGTTGGTGTGTAC 1371
Query 1259 ATGCATATGGTCGTTTCTTGGATTTTAGGACACCAAATGAA 1299
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATGCATATGGTCGTTTCTTGGATTTTAGGACACCAAATGAA 1412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5