BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483030
Length=2661
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39930.1 | Symbols: ISA1, ATISA1 | isoamylase 1 | chr2:16666... 4189 0.0
> AT2G39930.1 | Symbols: ISA1, ATISA1 | isoamylase 1 | chr2:16666023-16672494
FORWARD LENGTH=2718
Length=2718
Score = 4189 bits (2268), Expect = 0.0
Identities = 2551/2684 (95%), Gaps = 33/2684 (1%)
Strand=Plus/Plus
Query 1 ACACTTCTTCGTCTCTCTTTCACTCCTTTTG-GAAGCTCTCTT-TTCGAGCTTCCATGGA 58
||||||| |||||||||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct 1 ACACTTCGTCGTCTCTCTTTCACTACTTTTGAGAAGCTCTCTTCTTCGAGCTTCCATGGA 60
Query 59 TTCCATCAAATGCAGTTCCAGTTTTCTTCATCGCACCAAGCTCAACATTCTCTTCTCTAA 118
| | |||||||||||||||||||| || |||| |||||||||||||| ||||||||||||
Sbjct 61 TGCAATCAAATGCAGTTCCAGTTTCCTCCATCACACCAAGCTCAACACTCTCTTCTCTAA 120
Query 119 CCACGCCTTTCCTAAAATATCCGCACCCAATTTCAAGCGTCTCTTCCGACCAATTTCGAT 178
||| ||||||||||||| ||||| ||||||||||||| |||||||| || ||||||||
Sbjct 121 TCACACCTTTCCTAAAATCTCCGCTCCCAATTTCAAGCCCCTCTTCCGTCCGATTTCGAT 180
Query 179 TTCCGCAAAGG-CTAGACGAAGCAGCGAAGCTGAAAGTATCGCCGTAGTAGAGAAACCTC 237
||||||||||| | ||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct 181 TTCCGCAAAGGAC-AGAAGAAGCAACGAAGCTGAAAATATCGCCGTAGTAGAGAAACCTC 239
Query 238 TTAAATCAGAGAGATTTCTCGTCTCCGATGGACTTCCTTCTCCATTCGGAGCCACTGTCA 297
|||||||||| |||||| | ||||||||||||||||||||||||||||| |||| ||||
Sbjct 240 TTAAATCAGATAGATTTTTTATCTCCGATGGACTTCCTTCTCCATTCGGACCCACCGTCA 299
Query 298 GAGACGACGGCGTCAATTTCTCTGTTTACTCTACAAACTCCGTTTCCGCTACCATCTGCT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGACGACGGCGTCAATTTCTCTGTTTACTCTACAAACTCCGTTTCCGCTACCATCTGCT 359
Query 358 TGATTTCTCTCTCCGATCTCCGTCAGAACAAAGTGACGGAGGAGATTCAGCTAGATCCAT 417
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 TGATTTCTCTCTCCGATCTCCGTCAGAACAAAGTGACGGAGGAGATTCAGCTTGATCCAT 419
Query 418 CAAGAAATAGAACCGGCCATGTTTGGCATGTGTTCTTGAGAGGGGATTTCAAAGATATGT 477
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 420 CAAGGAATAGAACTGGCCATGTTTGGCATGTGTTCTTGAGAGGAGATTTCAAAGATATGT 479
Query 478 TGTATGGTTACAGATTTGATGGCAAGTTTTCTCCTGAAGAAGGTCATTATTATGATTCCT 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTATGGTTATAGATTTGATGGCAAGTTTTCTCCTGAAGAAGGTCATTATTATGATTCCT 539
Query 538 CCAACATTTTATTGGATCCTTACGCAAAGGCAATTATAAGCAGAGATGAGTTTGGAGTTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCAACATTTTATTGGATCCTTACGCAAAGGCAATTATAAGCAGAGATGAGTTTGGAGTTT 599
Query 598 TGGGACCTGATGAAAATTGTTGGCCTCAAATGGCGTCTATGGTTCCCACTCGTGATGAAG 657
||||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 600 TGGGACCTGATGATAATTGTTGGCCTCAAATGGCGTGTATGGTACCCACTCGTGAGGAAG 659
Query 658 AGTTTGATTGGGAAGGGGATATGCATCTGAAGCTTCAACAGAAGGATCTTGTTATATATG 717
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 660 AGTTTGATTGGGAAGGGGATATGCATCTGAAGCTTCCACAGAAAGATCTTGTTATATATG 719
Query 718 AAATGCATGTGCGAGGTTTCACAAGGCATGAATCTAGCAAAATTGAATTCCCTGGCACAT 777
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 720 AAATGCATGTGCGAGGTTTTACAAGGCATGAGTCTAGTAAAATTGAATTCCCTGGCACAT 779
Query 778 ACCAAGGTGTTGCAGAGAAGCTTGACCATTTGAAGGAGCTTGGTATAAATTGCATAGAAT 837
|||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 780 ACCAGGGTGTTGCAGAGAAGCTTGACCATTTGAAGGAGCTTGGGATAAATTGTATAGAAT 839
Query 838 TAATGCCATGCCACGAGTTTAATGAGCTGGAGTATTACAGCTACAATACGATTCTGGGAG 897
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 840 TAATGCCATGTCACGAGTTTAATGAGCTGGAGTATTACAGCTACAATACGATTTTGGGAG 899
Query 898 ACCACAGGGTAAATTTTTGGGGTTACTCGACCATTGGGTTCTTCTCGCCCATGATCAGAT 957
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 900 ACCACAGGGTAAATTTTTGGGGTTACTCTACCATTGGGTTCTTCTCGCCCATGATCAGAT 959
Query 958 ACGCGTCGGCAAATTCTAACAATTTTGCTGGAAGAGCCATAAATGAGTTCAAAATTCTTG 1017
|||| || |||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 960 ACGCATCAGCAAGCTCTAACAATTTTGCTGGACGAGCCATAAATGAATTCAAAATTCTTG 1019
Query 1018 TTAAAGAAGCACATAAACGAGGAATTGAGGTAATCATGGATGTCGTGTTGAACCACACAG 1077
|||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1020 TTAAGGAGGCACATAAACGAGGAATTGAGGTAATCATGGATGTCGTCTTGAACCACACAG 1079
Query 1078 CTGAAGGGAATGAAAAAGGGCCCATTTTCTCATTTAGAGGAGTTGATAACAGTGTCTATT 1137
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCGAAGGGAATGAAAAAGGGCCCATTTTCTCATTTAGAGGAGTTGATAACAGTGTCTATT 1139
Query 1138 ACATGCTTGCTCCAAAGGGCGAGTTCTATAATTATTCAGGCTGTGGTAATACATTCAACT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACATGCTTGCTCCAAAGGGCGAGTTCTATAATTATTCAGGCTGTGGTAATACATTCAACT 1199
Query 1198 GCAATCATCCCGTGGTGCGTCAATTCATAGTGGATTGCCTGAGATATTGGGTTACAGAAA 1257
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 GCAATCATCCTGTGGTGCGTCAATTCATATTGGATTGCCTGAGATATTGGGTTACAGAAA 1259
Query 1258 TGCATGTCGACGGCTTCCGCTTTGATCTTGGTTCAATCATGTCAAGGAGCAGCAGCCTTT 1317
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCATGTTGACGGCTTCCGCTTTGATCTTGGTTCAATCATGTCAAGGAGCAGCAGCCTTT 1319
Query 1318 GGGATGCAGCCAATGTTTATGGGGCTGATGTAGAAGGTGACTTGCTGACCACTGGTACTC 1377
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 1320 GGGATGCAGCCAATGTTTACGGGGCTGATGTAGAAGGTGACTTGCTCACAACTGGTACTC 1379
Query 1378 CTATTAGCTGCCCTCCAGTAATTGACATGATAAGTAATGATCCAATACTCCGCGGTGTTA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CTATTAGCTGCCCTCCAGTAATTGACATGATAAGTAATGATCCAATACTCCGCGGTGTTA 1439
Query 1438 AGCTAATAGCTGAAGCATGGGATGCGGGTGGGCTATACCAAGTTGGCATGTTTCCACACT 1497
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1440 AGCTAATAGCTGAAGCATGGGATGCGGGTGGGCTGTACCAAGTTGGCATGTTTCCACACT 1499
Query 1498 GGGGTATTTGGTCTGAGTGGAATGGAAAGTTCCGGGATGTTGTGAGACAGTTCATAAAAG 1557
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1500 GGGGTATTTGGTCTGAGTGGAATGGAAAGTTTCGGGATGTTGTGAGACAGTTCATAAAAG 1559
Query 1558 GCACCGATGGCTTTTCTGGTGCTTTTGCTGAATGTCTTTGTGGAAGCCCAAATTTGTACC 1617
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1560 GCACCGATGGCTTTTCTGGTGCTTTTGCTGAATGTCTCTGTGGAAGCCCAAATCTGTACC 1619
Query 1618 AGGGAGGTAGGAAACCTTGGAACAGCATCAATTTTATATGTGCGCATGATGGTTTTACGT 1677
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1620 AGGGAGGTAGGAAACCTTGGCACAGCATCAATTTTATATGTGCGCATGATGGTTTTACGT 1679
Query 1678 TGGCAGATTTAGTAACTTACAACAATAAGAATAACTTGGCAAATGGAGAAGAGAATAATG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGGCAGATTTAGTAACTTACAACAATAAGAATAACTTGGCAAATGGAGAAGAGAATAATG 1739
Query 1738 ATGGAGAGAATCACAATTACAGCTGGAACTGTGGAGAGGAGGGAGACTTTGCGAGTATCT 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATGGAGAGAATCACAATTACAGCTGGAACTGTGGAGAGGAGGGAGACTTTGCGAGTATCT 1799
Query 1798 CGGTGAAGAGACTAAGGAAACGACAGATGCGAAATTTCTTTGTTTCCCTCATGGTTTCCC 1857
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1800 CGGTGAAGAGACTAAGGAAACGACAGATGCGGAATTTCTTTGTTTCCCTCATGGTTTCCC 1859
Query 1858 AAGGTGTCCCAATGATCTACATGGGAGATGAATATGGCCATACGAAAGGGGGAAACAACA 1917
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1860 AAGGTGTCCCAATGATTTACATGGGAGATGAATATGGCCATACTAAAGGGGGAAACAACA 1919
Query 1918 ACACTTATTGCCATGACAACTATATGAACTATTTTCGGTGGGATAAAAAGGAAGAAGCAC 1977
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1920 ACACGTATTGCCATGACAACTATATGAACTATTTTCGGTGGGATAAAAAGGAAGAAGCAC 1979
Query 1978 ATTCTGACTTCTTCAGATTCTGCCGTCTTCTTATCAAGTTTCGTGATGAATGTGAATCAC 2037
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1980 ATTCTGACTTCTTCAGATTCTGCCGTATTCTTATCAAGTTTCGTGATGAATGTGAATCAC 2039
Query 2038 TTGGCCTGAATGATTTCCCAACAGCAAAGCGTCTGCAGTGGCATGGTCTTGCTCCTGAGA 2097
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TTGGCTTGAATGATTTCCCAACAGCAAAGCGTCTGCAGTGGCATGGTCTTGCTCCTGAGA 2099
Query 2098 TCCCAAATTGGTCTGAAACAAGTCGATTTGTTGCATTTTCACTGGTCGATTCTGTGAAGA 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2100 TCCCAAATTGGTCTGAAACAAGTCGATTTGTTGCATTTTCACTGGTCGATTCTGTGAAGA 2159
Query 2158 GAGAAATCTATGTGGCTTTCAACACTAGTCATTTAGCCACACTTGTTTCTCTGCCTAACA 2217
||||||||||||||| |||||||| ||||||||||||||||||||||| || || || |
Sbjct 2160 AAGAAATCTATGTGGCCTTCAACACCAGTCATTTAGCCACACTTGTTTCGCTACCGAATA 2219
Query 2218 GGCCTGGATACCGATGGGAGCCATTTGTAGACACGAGCAAACCGAGCCCATACGACTGCA 2277
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2220 GGCCAGGATACCGATGGGAGCCATTTGTAGACACGAGCAAACCGAGCCCTTACGACTGCA 2279
Query 2278 TAACACCGGATCTCCCAGAGAGAGAAACGGCGATGAAGCAGTATAGGCACTTCTTAGATG 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2280 TAACACCGGATCTCCCAGAGAGAGAAACGGCGATGAAGCAGTATAGGCACTTCTTAGATG 2339
Query 2338 CAAATATGTACCCAATGCTCAGTTACTCTTCCATCATCCTCCTTCTTTCACCAATTGAAG 2397
||||| |||||||||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 2340 CAAATGTGTACCCAATGCTCAGTTACTCATCCATCATTCTCCTTCTTTCACCAATTAAAG 2399
Query 2398 ACACCTGAGTTTGCGTGATCCCCCTCCAAAAGTGCGTTAGAGAAA-TCACAAAATATGGG 2456
|| |||||||||||||||| || |||||||| | ||||| ||| |||||| |||||
Sbjct 2400 ACCCCTGAGTTTGCGTGATTCC--TCCAAAAGCGTATTAGACAAAATCACAACATATGAA 2457
Query 2457 GGAATCTTCTCAAATGTGAAATGAGATGCATATTAC-GACAACTATTTCGTTACCTGA-A 2514
|||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | |
Sbjct 2458 GGAATCTTCTCAAATGTGAA-TGAGATGCATAT-ACAGACAACTATTTCGTTACCT-ATA 2514
Query 2515 TAATGATATTATTGTAAAGGTTC-TTTTATGTTTAGAAGAATCTGAATGGGGTACCTTTG 2573
||||| |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 2515 TAATG-TATTATAGTAAAGGTTCCTTTTATGGTTAGAAGAATCTGAATGGGGTACCTTTG 2573
Query 2574 GTCGGTTTCA--T-TG-----T-A-----AATAGATTCCTTTATTGTCTGTTAATTTAAT 2619
||||| |||| | || | | ||||||||||||||| |||||||||| |||
Sbjct 2574 GTCGGCTTCAGATATGCCCACTCATTGTTAATAGATTCCTTTATCGTCTGTTAATCCAAT 2633
Query 2620 CAAA-GCTTTGTTACATGCGTTTTC-GAAATTCGTGTAAGAACA 2661
|||| |||| ||||||| ||||||| ||| ||||||||||||||
Sbjct 2634 CAAAAGCTT-GTTACAT-CGTTTTCAGAA-TTCGTGTAAGAACA 2674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132139727862
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5