BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483031 Length=2191 Score E Sequences producing significant alignments: (Bits) Value AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | ch... 3083 0.0 > AT2G39940.1 | Symbols: COI1 | RNI-like superfamily protein | chr2:16672493-16675748 REVERSE LENGTH=2396 Length=2396 Score = 3083 bits (1669), Expect = 0.0 Identities = 1992/2138 (93%), Gaps = 61/2138 (3%) Strand=Plus/Plus Query 61 CTCACTCTCGTGTTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 120 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 140 CTCACTCTGGTGGTTATGTGTGGATCTGCGACCTCGATTTCAATTCGAAGTCGTCGGTTT 199 Query 121 CTTCACTAAATCGAA----T-C-----TC--tt-tttttttC---------TTCTTCGAT 158 |||| |||||||||| | | || || |||||||| || |||||| Sbjct 200 CTTCTCTAAATCGAATCTTTCCAGGATTCGTTTGTTTTTTTCTTTTGTTTTTTTTTCGAT 259 Query 159 CCGATGGAGGATCCTGATATCAAGAGGTGTAGATTGAGCTGCGTCGCGACGGTTGATGAC 218 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 260 CCGATGGAGGATCCTGATATCAAGAGGTGTAAATTGAGCTGCGTCGCGACGGTTGATGAT 319 Query 219 GTCATCGAGCAAGTCATGACGTATATAACCGACCCCAAAGATCGCGATTCGGCGTCTTTG 278 |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||| Sbjct 320 GTCATCGAGCAAGTCATGACCTATATAACTGACCCGAAAGATCGCGATTCGGCTTCTTTG 379 Query 279 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 380 GTGTGTCGGAGATGGTTCAAGATTGATTCCGAGACGAGAGAGCATGTGACTATGGCGCTT 439 Query 339 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTTCCGAACTTGAGGTCGCTCAAG 398 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 440 TGCTACACTGCGACGCCTGATCGTCTTAGCCGTCGATTCCCGAACTTGAGGTCGCTCAAG 499 Query 399 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTCATCCCGGAGAACTGGGGAGGATAT 458 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| Sbjct 500 CTTAAAGGCAAGCCTAGAGCAGCTATGTTTAATCTGATCCCTGAGAACTGGGGAGGTTAT 559 Query 459 GTTACTCCTTGGGTTACTGAGATTTCTAA-ATCGCTTAAGCAGCTCAAATCGGTTCACTT 517 ||||||||||||||||||||||||||||| | | |||| ||||||||||||||| ||||| Sbjct 560 GTTACTCCTTGGGTTACTGAGATTTCTAACAAC-CTTAGGCAGCTCAAATCGGTGCACTT 618 Query 518 CCGACGGATGATTGTCAGTGACTTAGATCTGGATCGTTTAGCTAAAGCCAGAGCAGATGA 577 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 619 CCGACGGATGATTGTCAGTGACTTAGATCTAGATCGTTTAGCTAAAGCTAGAGCAGATGA 678 Query 578 TCTTGA-AGCTTTGAAGCTCGATAAGTGCTCTGGTTTCACTACTGATGGACTTTTGAGCA 636 |||||| | |||||||||| || ||||| |||||||| |||||||||||||||||||||| Sbjct 679 TCTTGAGA-CTTTGAAGCTAGACAAGTGTTCTGGTTTTACTACTGATGGACTTTTGAGCA 737 Query 637 TCGTTACACACTGCAGGAAAATAAAAACGTTGTTAATGGAAGAGAGTTCTTTTATTGAAA 696 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 738 TCGTTACACACTGCAGGAAAATAAAAACTTTGTTAATGGAAGAGAGTTCTTTTAGTGAAA 797 Query 697 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 756 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 798 AGGATGGTAAGTGGCTTCATGAGCTTGCTCAGCACAACACATCTCTTGAGGTTTTAAACT 857 Query 757 TCTACATGACGGAGTTTGCCAAAATCAG-CGCCAAAGACTTGGAAACCATAGCTAGAAAT 815 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 858 TCTACATGACGGAGTTTGCCAAAATCAGTC-CCAAAGACTTGGAAACCATAGCTAGAAAT 916 Query 816 TGCCGCTCTCTGGTTTCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 875 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 917 TGCCGCTCTCTGGTATCTGTGAAGGTCGGTGACTTTGAGATTTTGGAACTAGTTGGGTTC 976 Query 876 TTTAAGGCCGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCCTGAATGAGGATATTGGA 935 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 977 TTTAAGGCTGCAGCTAATCTTGAAGAATTTTGTGGTGGCTCCTTGAATGAGGATATTGGA 1036 Query 936 ATGCCTGAGAAGTACATGAATCTGGTTTTCCCCCGAAAGCTATGCCGTCTAGGCCTCTCT 995 ||||||||||||||||||||||||||||| |||||||| ||||| || || || |||||| Sbjct 1037 ATGCCTGAGAAGTACATGAATCTGGTTTTTCCCCGAAAACTATGTCGGCTTGGTCTCTCT 1096 Query 996 TATATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAGATCCGAAAGCTG 1055 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1097 TACATGGGACCTAATGAAATGCCAATACTATTTCCATTCGCGGCCCAAATCCGAAAGCTG 1156 Query 1056 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTAATCCAAAAGTGTCCT 1115 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1157 GATTTGCTTTATGCATTGCTAGAAACTGAAGACCATTGTACGCTTATCCAAAAGTGTCCT 1216 Query 1116 AATTTGGAAGTTCTCGAGACAAGGAATGTAATTGGAGATAGGGGTCTAGAGGTTCTTGCA 1175 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1217 AATTTGGAAGTTCTCGAGACAAGGAATGTAATCGGAGATAGGGGTCTAGAGGTCCTTGCA 1276 Query 1176 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGGGGTGCAGATGAACAAGGAATG 1235 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1277 CAGTACTGTAAGCAGTTGAAGCGGCTGAGGATTGAACGCGGTGCAGATGAACAAGGAATG 1336 Query 1236 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1337 GAGGACGAAGAAGGCTTAGTCTCACAAAGAGGATTAATCGCTTTGGCTCAGGGCTGCCAG 1396 Query 1296 CAGCTAGAATACATGGCGGTGTATGTCTCAGACATTACGAACGAATCTCTTGAAAGCATA 1355 ||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 1397 GAGCTAGAATACATGGCGGTGTATGTCTCAGATATAACTAACGAATCTCTTGAAAGCATA 1456 Query 1356 GGCATATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1415 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1457 GGCACATATCTGAAAAACCTCTGTGACTTCCGCCTTGTCTTACTCGACCGGGAAGAAAGG 1516 Query 1416 ATTACAGATTTACCATTGGACAACGGAGTGCGATCCCTCTTGATTGGATGCAAGAAACTC 1475 ||||||||| | ||| ||||||||||||| ||||| || ||||||||||||||||||||| Sbjct 1517 ATTACAGATCTGCCACTGGACAACGGAGTCCGATCTCTTTTGATTGGATGCAAGAAACTC 1576 Query 1476 AGACGGTTTGCTTTCTATCTCAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1535 ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1577 AGACGATTTGCATTCTATCTGAGACAAGGCGGCTTAACCGACTTGGGCTTAAGCTACATC 1636 Query 1536 GGACAATACAGTCCAAATGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCGGATGAA 1595 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1637 GGACAGTACAGTCCAAACGTGAGATGGATGCTGCTGGGTTACGTAGGTGAATCAGATGAA 1696 Query 1596 GGTTTAATGGAATTCTCGAGAGGTTGTCCGAATCTACAGAAGCTAGAGATGAGAGGCTGT 1655 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 1697 GGTTTAATGGAATTCTCAAGAGGCTGTCCAAATCTACAGAAGCTAGAGATGAGAGGTTGT 1756 Query 1656 TGCTTCAGCGAGCGAGCAATCGCTGCAGCAGTTACAAAATTGCCTTCACTGAGATATTTG 1715 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 1757 TGCTTCAGTGAGCGAGCAATCGCTGCAGCGGTTACAAAATTGCCTTCACTGAGATACTTG 1816 Query 1716 TGGGTACAAGGTTACAGAGCATCAATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1775 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1817 TGGGTACAAGGTTACAGAGCATCGATGACGGGACAAGATCTAATGCAGATGGCTAGACCG 1876 Query 1776 TACTGGAACATCGAGCTGATACCATCGAGAAAAGTACCGGAAGTGAATCAGCTAGGAGAG 1835 |||||||||||||||||||| ||||| |||| ||| |||||||||||||| | ||||||| Sbjct 1877 TACTGGAACATCGAGCTGATTCCATCAAGAAGAGTCCCGGAAGTGAATCAACAAGGAGAG 1936 Query 1836 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGTCAGAGA 1895 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1937 ATAAGAGAGATGGAGCATCCGGCTCATATATTGGCTTACTACTCTCTGGCTGGCCAGAGA 1996 Query 1896 ACAGATTGTCCAACAACTGTTAGAGTCCTGAGGGAGCCAATATGAT-TGGACC-AAAAAA 1953 ||||||||||||||||||||||||||||||| |||||||||||||| || ||| |||||| Sbjct 1997 ACAGATTGTCCAACAACTGTTAGAGTCCTGAAGGAGCCAATATGATATG-ACCCAAAAAA 2055 Query 1954 CAGGTTTGTATATAAAGATTTGTAGTGTCGAGTTTTGGGGTTTCTT-----TG-GTTCT- 2006 ||||||||||||||||||||| |||| ||||||||||||||||| || || || Sbjct 2056 CAGGTTTGTATATAAAGATTTTTAGTCTCGAGTTTTGGGGTTTCCACAAACTGTGTACTA 2115 Query 2007 T--TA-TTT--TT--------GATTCATGTTGTATCGTCAGATGTTTTTGGGAGATTACA 2053 | || ||| || | |||||||||| ||||| |||||||||||||||||||| Sbjct 2116 TACTACTTTGGTTCTTTTTTTGTTTCATGTTGTGTCGTC-GATGTTTTTGGGAGATTACA 2174 Query 2054 TAGAGTC--T-T-GTTTGT---ATGGTCATCACTTCTTTATTTTTCCACAGGGGTCTGTC 2106 ||||||| | | |||||| |||||||| |||||||||||||||| ||||||||||| Sbjct 2175 TAGAGTCAGTCTTGTTTGTTGTATGGTCATTACTTCTTTATTTTTCCTCAGGGGTCTGTT 2234 Query 2107 TACTCTTC-TTTCTTTAATAAAACCCCAAAGATTTTGA 2143 |||| || |||||||||||||||||| |||||||||| Sbjct 2235 TACT-TTAATTTCTTTAATAAAACCCCGAAGATTTTGA 2271 Score = 122 bits (66), Expect = 1e-26 Identities = 68/69 (99%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 TCCCACTTTCTTCTTCTTCCTCCCAATCCGCCTCTTCTTCCTACGCGTGTCTCCTTCTCC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 17 TCCCACTTTCTTCTTCTTCCTCCCAATCCGCCTCTTCTTCCTACGCGTGTCTTCTTCTCC 76 Query 61 CTCACTCTC 69 ||||||||| Sbjct 77 CTCACTCTC 85 Score = 80.5 bits (43), Expect = 6e-14 Identities = 51/54 (94%), Gaps = 3/54 (6%) Strand=Plus/Plus Query 2139 TTTGATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAATAG-CAAATAATA 2191 ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 2339 TTT-ATTTGTGGTTGTGATTGTTTTGATAACATTAGTAAAA-AGGCAAATAATA 2390 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108684179925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5