BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483032
Length=2302
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39950.1 | Symbols: | unknown protein; Has 978 Blast hits t... 3323 0.0
> AT2G39950.1 | Symbols: | unknown protein; Has 978 Blast hits
to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa
- 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes
- 767 (source: NCBI BLink). | chr2:16676542-16680489
REVERSE LENGTH=2412
Length=2412
Score = 3323 bits (1799), Expect = 0.0
Identities = 2072/2199 (94%), Gaps = 38/2199 (2%)
Strand=Plus/Plus
Query 126 CAATTTCTGGATCGAG-TTTTGGTTTCTCTGACAAGTTACCGATCCGATATTTGATATGG 184
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 230 CAATTTCTGGATCGAGTTTTTGGTTTCTCTGACAAGTTACCGATACGATATTTGATATGG 289
Query 185 CCGATTCTAGGAAACGAGATACCGGAGACG---AT---CACCGTGATGATCAGCCAAATG 238
||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 290 CCGATTCTAGGAAGCGAGATACCGGAGACGATCATCAGCACCGTGATGATCAACCAAATG 349
Query 239 ACGACGGCGA---G--GA--T-GT-GTCGACGATTGATGATTCTCGATTTAATGGATCCG 289
||| | || | | | || |||||||| |||||| |||| |||||||||| |||
Sbjct 350 ACGGTGATGATTTGTCTATTTCGTCGTCGACGACTGATGACTCTCAATTTAATGGAACCG 409
Query 290 AAAGAGATAATCAATCGACGAGGATCGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 349
|| |||| ||| ||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 410 AAGGAGAGAATGAATTGACGAGGATTGAGAGTAGAGTTTCAGATCCGTTGACTGATGCAA 469
Query 350 CCGGAGGAGACTTTTTGGTTGGTGAGGATAGGGTTTTGCGGTGGTTGCAAGCTTTGGATA 409
|||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
Sbjct 470 CCGGAGGAGACTTTTTGGTTGGAGAGGATAGGGTTTTACGGTGGTTACAAGCTTTGGACA 529
Query 410 TGCAAGTTATGGGAGCTTGTCGAGGTGACGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 469
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 530 TGCAAGTTATGGGAGCTTGTCGAGGTGATGAGAGATTGAAGCCGTTGTTGAAGCTTAACG 589
Query 470 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCCCATCTTAGTCAGCACTTCGAGCCGG 529
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 590 TTTCTAATGGAATGGCTGAAGATCGATTGCTTGCGCATCTTAGCCAGCACTTCGAGCCTG 649
Query 530 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGGAAATTGGTATGCTGGCTAGATGTTTTTGCATACCTCTGGTTTCGGTTCGCGTCGGGA 709
Query 590 AGATTA-AGAAGGAAGGAACTCTAATGCGCCCCACTCCCATAAGGGGTAACTTGAGCCTT 648
|||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 710 AGATTATA-AAGGAAGGGATTCTAATGCGCCCCACTCCCATAAGGGGTAACCTGAGCCTT 768
Query 649 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATCGGAGACAATGGTCATTCAGAA 708
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 769 ATGGTCTTGCCAACATCTGACTTGAGACTCTCATTTATTGGAGACAATGGTCATTCAGAA 828
Query 709 CAACTCTTTACGTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 768
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CAACTCTTTACCTATACCAGCAAATCTCAGTGCTCTGCGGTGTCAATTGAGGAGATAACT 888
Query 769 GCGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAGATGGCAATGCTTTTTACTAT 828
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 889 GTGGACAGCTCTGGTAGATCTTTTGTTATAAGGATCGCAAATGGCAATGCTTTTTACTAT 948
Query 829 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TGGTGCTCAGAGAAGTCAAAACTTCTGGGAACTGAATTGCGTAGGAAGATGAAAGACTTG 1008
Query 889 ATCAAGAAGAAGCCATCAATCTCGGAACTAACTGGAATTGAAGAATCACGACTTGGCTCT 948
||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1009 ATCAAGAAGAAGCCATCAATCTCAGAATTAACTGGAATTGAAGAATCACGTCTTGGCTCT 1068
Query 949 GTTGCTTCTCATCTCCGTTTGTATCTTATGGGATCAGTGGTACCTAACATCAAAGGTTGT 1008
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1069 GTTGCTTCTCATCTCCGTTTGTATCTCATGGGTTCAGTGGTGCCTAACATCAAAGGTTGT 1128
Query 1009 CCGGTCTCATCTCCTGATTCATCATCATCTTCTGGCTCTTCTGAAACAGCTGATTCCTCC 1068
| |||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1129 CAGGTCCCATCTCCTGATTCATCATCATCTTCTGGCTTTTCTGAAACAGCTGA-T--TCC 1185
Query 1069 TCCTCGAGTGCATCCTCAAAATCTCTTAGAGCACGCCACGGTGGGACTCAACAGACAAAG 1128
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1186 TCCTCGAGTGCATCATCAAAATCTCTTAGAGCACGCCACTGTGGGACTCAACAGACAAAG 1245
Query 1129 ACTCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAACT-C 1187
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1246 ACCCAAGGAAGCCTCAGCCCTAGAGCAAGCTCCTTCAAAGAAAACACACTGAGAAA-TGC 1304
Query 1188 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGCGACGCAGTGAAGGCCATTTCTCAAT 1247
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1305 TTCTCTACGTATCTCCTCTAGAGATAAATCAAAGGGACACAGTGAAGGCCATTTCTCAAT 1364
Query 1248 CTTTGATAATTTATTATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTCTCCAGTC 1307
||||||||| | | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1365 CTTTGATAA--T-TCATCCATTACCTCTATCCCCACCAATGTAGAGGGTTTTATCCAGTC 1421
Query 1308 AGAAGGAGAAGGTGAAGAAGCCACTGAGAATAATAATGGAATCAGTCAAATTATTGCTTT 1367
||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||||||||
Sbjct 1422 AGAAGGAGAAGTTGAAGAAGCTACTGAGAATTATAATGGAATCAGACAAATTATTGCTTT 1481
Query 1368 CGAAGAAGGGGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1427
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 TGAAGAAGCAGAGTCAACACCAAGTACAATGACCGGACCTCCCCCATTTCCTTTGAAGAT 1541
Query 1428 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACCTCATCGCTTCA 1487
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1542 GGGTCCACCAGTCTTTTCTCCTTATTATTGCTGGTGCCCTCCAACCACTTCATCGCTTCA 1601
Query 1488 CTCACCATCTGCTTCTTATCAGTTCCCTCCACTATCCATCGAGCTACCTTCCCTTCCGCC 1547
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1602 CGCACCATCTGCCTCTTATCAGTTCCCTCCACTATCCATTGAGCTACCTTCCCTTCCGCC 1661
Query 1548 TCTTTCTTCCTTGTTACCAGCATCAGGATCGGATGGGTTCTTGATCCCGTCATCACCGCT 1607
||||| ||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 1662 ACTTTCCTCCTTATTACCAGCATCGGGATCAGATGGATTCTTGATCCCGTCATCACCGCT 1721
Query 1608 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCtcatc 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 CGATCTCTCTGACATCCCTCCATTACCATTAGTCCACCACATACCCATTCCAGGCTCATC 1781
Query 1668 atcatcatcatcCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 ATCATCATCATCCCAGCAACAGATGATGATTCCTATAATGTGCGACCCTATTGTTCATAT 1841
Query 1728 TCCAGTTATCGATATCTACTCTTCGGGTCAAGGCTATCTGGTTAGCACTGGACCCACCGG 1787
||||||||||||||||| |||||| |||||| |||||||||| ||| |||||||||||||
Sbjct 1842 TCCAGTTATCGATATCTTCTCTTCAGGTCAAAGCTATCTGGTAAGCGCTGGACCCACCGG 1901
Query 1788 GATGATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1847
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 GATAATATCCACGGGCATCCCTCCGCTCCCAGTGGAGAATGATTCGCTGGTCGAGAAAGG 1961
Query 1848 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACCTCTACACCTTT 1907
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1962 TGCAAGAGAAACACTACGATTGCTCATAAGCGGAGCCAATGCAACAACATCTACACCTTT 2021
Query 1908 GAACCACCATGGAAGCAGAGGTCTATACAGTGGGAGCCGGGACGTGAGTGGTGTGAGCTT 1967
|||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 2022 GAACCATCATGGAAGCAGAGGTCTATACAGTGTGAGCCGGGATGTGAGTGGTGTGAGCTT 2081
Query 1968 GTTTGGACCTATTGGGCTGCAACAACCGAGTTCAGTTGACGGAGGAGATGGTGGTGGTGA 2027
||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2082 GTTTGCACCTATTGGGTTGCAACAACCGAGTTCAGTTGAGGGAGGAGATGGTGGTGGTGA 2141
Query 2028 GAGTGTGAGCTCAGGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAGttttt 2087
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2142 GAGTGTGAGCTCAAGCGAAGCAGTGCCTGCGCCTCCCAGAGAGACTTCTGGTTAATTTTT 2201
Query 2088 ttGGTTCTTTGTAAGTGTGGTTCCGaaaaaaaGTGTATAGAAAACTCATCTCTCGGTTAG 2147
||||||||||||||||||||| |||| || ||||||||||||||||||||||| |||
Sbjct 2202 TTGGTTCTTTGTAAGTGTGGT-CCGAGTTAA-GTGTATAGAAAACTCATCTCTCGCCTAG 2259
Query 2148 TTCTTGGTTTTGTTCATC--AAGTCTTTTGGTT-CAGGTGTAATTAGTCGGGTTTTTTGT 2204
|| ||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||
Sbjct 2260 TTTTTGGTTTTGTTCAGCCCAAGTCTTTTGGTTTCAGGTGTAATTAGTCGGGTTTTTTGT 2319
Query 2205 AGCTTGCTTATTATTACCTTTTGTTATTTCCGAGTTTCAAAGGAAGCTAAGAAATACGAT 2264
||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2320 AGCTTGCTTAT-ATTACCTTT-GTTATTTCCGAGTTTCAAATGAAGCTAAGAAATACGAT 2377
Query 2265 CATAATAAAAA-GTTACTTATTTTGCAGTATTAATTTTC 2302
||||||||||| ||| ||| || |||||||| ||||||
Sbjct 2378 CATAATAAAAAAGTT-CTT-TT--GCAGTATTCATTTTC 2412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114256440420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5