BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483034
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G39960.1 | Symbols: | Microsomal signal peptidase 25 kDa su... 1243 0.0
> AT2G39960.1 | Symbols: | Microsomal signal peptidase 25 kDa
subunit (SPC25) | chr2:16681474-16683640 REVERSE LENGTH=920
Length=920
Score = 1243 bits (673), Expect = 0.0
Identities = 727/753 (97%), Gaps = 3/753 (0%)
Strand=Plus/Plus
Query 1 TAGCTCCATCCAATATATCGTCTTCTTCCTTCTCCTCGAACCAAAAACATCAGTCTCTCC 60
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1 TAGCTCCATCCAATATATCGTCTTCTT-C--CTCCTCGAACCAAAAACATCAGTCTCTCC 57
Query 61 TAGTCTCTGCGCTCCTGAAAATCTCACACTCTGCGTTCGAATTTTCGAAGAACATTAGAG 120
||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 58 TAGTCTCAGCGCTCGTGAAAATCTGAAACTCTGCGTTCGAATTTTCGAAGAACATTAGAG 117
Query 121 ATCTGGTATTATCTGGATCCGATCTGGTCACCATGGAAGAGAAGAAGATAGAATCAACCA 180
|||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||
Sbjct 118 ATCTGGTATTATCTGGATCCGATCTGTTCACCATGGAGGAGAAGAAGACAGAATCAACCA 177
Query 181 ACAAGAATGTTAAGAAGGCCAATCTATTGGACCACCACTCGATCAAGCACATCCTCGACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 178 ACAAGAATGTTAAGAAGGCCAATCTATTGGACCACCACTCGATCAAGCACATCCTTGACG 237
Query 241 AATCCGTCTCCGATATCGTTACGAGCCGTGGCTATAAGGAGGATGTGAGGTTGAGCAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 238 AATCCGTCTCCGATATCGTTACGAGCCGTGGCTATAAGGAGGATGTGAGATTGAGCAACC 297
Query 301 TCAAATTGATTTTGGGAACGATAATCATCGTTGTTGCTCTTGTTGCTCAGTTCTACAACA 360
||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 298 TCAAACTGATTTTGGGAACGATTATCATCGTTGTTGCTCTTGTTGCTCAATTCTACAACA 357
Query 361 AGAAATTCCCTGAGAACAGGGATTTTTTAATTGGATGCATCGCATTGTATGTAGTGTTGA 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 AGAAATTCCCTGAGAACAGGGATTTTTTGATTGGATGCATCGCATTGTATGTAGTGTTGA 417
Query 421 ATGCGGTGTTGCAGCTGATTCTGTACACTAAGGAGAAGAATGCTATTCTGTTCACCTATC 480
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 418 ATGCGGTGTTGCAGCTGATTCTGTACACTAAGGAGAAGAATGCGATTTTGTTCACCTATC 477
Query 481 CTCCTGAGGGATCATTCACCAGCACTGGCTTGGTGGTATCTTCAAAGTTGCCTAGATTCT 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 478 CTCCTGAGGGATCATTCACCAGCACTGGTTTGGTGGTATCTTCAAAGTTGCCCAGATTCT 537
Query 541 CTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCTCAGCTGGGAAGT 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTGATCAGTACACTCTCACCATCGACAGTGCTGATCCAAAATCAATCTCAGCTGGGAAGT 597
Query 601 CAGTTGAGTTGACCAAAAGTGTCACCCAATGGTTCACGAAAGATGGAGTTCTTGTTGAGG 660
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGTTCAGCTCACCAAAAGTGTCACCCAATGGTTCACGAAAGATGGAGTTCTTGTTGAGG 657
Query 661 GTTTATTCTGGAAAGACGTGGAAGCACTAATCAAGAACTATGCAGAAGAAGAACCAAAGA 720
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTTTATTCTGGAAAGACGTAGAAGCACTAATCAAGAACTATGCAGAAGAAGAACCAAAGA 717
Query 721 AGAAGAAATGATCATCTTTCGGAGAAATATATG 753
|||||||||||||||||| | ||||||||||||
Sbjct 718 AGAAGAAATGATCATCTTCCAGAGAAATATATG 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5