BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483038 Length=1182 Score E Sequences producing significant alignments: (Bits) Value AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic transl... 1700 0.0 > AT2G39990.1 | Symbols: EIF2, AteIF3f, eIF3F | eukaryotic translation initiation factor 2 | chr2:16698092-16700012 REVERSE LENGTH=1205 Length=1205 Score = 1700 bits (920), Expect = 0.0 Identities = 1106/1194 (93%), Gaps = 20/1194 (2%) Strand=Plus/Plus Query 1 TCCTCTAACGCTCACATCGGAAACCCTAAATCTCCA--CTCT-----CTTTTACCCGTTC 53 |||||| ||||||||||||||||||||||||||||| |||| ||||||||| ||| Sbjct 10 TCCTCTGACGCTCACATCGGAAACCCTAAATCTCCACTCTCTCGCGCCTTTTACCCCTTC 69 Query 54 TCAGAATCTTAACCATGGCGGCGGCGAGCGAGCACACCGTCTTGCAATTCGTGGCTCCTT 113 ||||||||||||||||||||||| |||||||||||||| |||||||||| ||| |||| | Sbjct 70 TCAGAATCTTAACCATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGT 129 Query 114 CATCAACGGCGACGGCAACAACCTCTGTACTCACGGCGAGAATCCACCCTCTCGTTATCT 173 ||||||||||| | || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 130 CATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCT 189 Query 174 TTAACGTCTGTGATTGCTTCGTGAGGCGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 233 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 190 TTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTC 249 Query 234 TCCTCGGATCTATCTTACCTGATGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 293 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 250 TCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTC 309 Query 294 ACAATGAATTTTCTGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 353 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 310 ACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTT 369 Query 354 CACATCTTAAGGTGAATCCCAAGGAAATTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 413 |||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||| Sbjct 370 CACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGG 429 Query 414 TTAATGGCGGTAGTGCGCTGATTCATGAGTTCTATGCTAGAGAAGTTA-CCAACCCAATT 472 |||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||| Sbjct 430 TTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAG-TACCCAACCCAATT 488 Query 473 CACCTAACTGTGGACACTGGCTTTACAAATGGTGAGGGTACCATAAAAGCTTTTGTCTCT 532 |||||||||||||| ||||| ||||| |||||||||||||| || ||||||||||||||| Sbjct 489 CACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCT 548 Query 533 TCAAACCTTTCACTTGGTGATCGACAACTTGCTGCACAATTTCAAGAGATTCCTGTTGAT 592 |||||||| ||||| |||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 549 TCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGAT 608 Query 593 CTCCGTATGGTTGATGCTGAGAGAGTCGGATTCAATGTCCTCAAGGCAACATCTGTTGAC 652 ||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||||| Sbjct 609 CTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGAC 668 Query 653 AAACTCCCAAATGACTTGGAAGGAATGGAGCTAACAATGGAGAGACTGTTAACTTTAATT 712 |||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| Sbjct 669 AAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATC 728 Query 713 AACGATGTCTACAAATATGTTGACAGCGTCGTGGAAGGTCAAACAGCTCCAGACAACAAC 772 |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| Sbjct 729 AACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAAC 788 Query 773 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAATTACCTCCTCAAGTCTTC 832 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 789 ATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTC 848 Query 833 GATGACCTTGTGAACGATAGCCTCCAGGACCAATTGCTTCTGTTGTACCTTTCAAGCATA 892 ||| |||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 849 GATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATA 908 Query 893 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTCTAATAA 952 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 909 ACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAATAA 968 Query 953 GCTTTGAAACACAAGGCTTTGCTAAAAATGTGGAATGCTGCTTTTTTGGTTTC-AGTTTT 1011 |||| ||||||||||| ||||||||||||| |||||||||||||||||||||| | |||| Sbjct 969 GCTTGGAAACACAAGGTTTTGCTAAAAATGGGGAATGCTGCTTTTTTGGTTTCGAATTTT 1028 Query 1012 TCTGTTAACAAGTTTTATGTAAGAATCAGCCTCTTGATGTAGTGTTCCTAAATTGCAA-T 1070 || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| | Sbjct 1029 -CTTTTAACAAGTTT-ATGTAAGAATCAGCTTCTTGTTGTAGTGTTCCTAAATTGCAAGT 1086 Query 1071 TTATA-AAGAGACAAAA-GACTCAGTTTCGTGAGTTAAGGTCTTTAAATGAGTTCTTTTT 1128 ||| | || |||||||| | ||| ||||||||| |||||||||||||| | | | |||| Sbjct 1087 TTA-AGAA-AGACAAAATG-CTCTGTTTCGTGAATTAAGGTCTTTAAAAGGGAT-TTTT- 1141 Query 1129 AGTTGGTAAGTCTAATTTTAAACAAGATACATAAAAATGAGCTTTGTTCTTTTT 1182 ||||||| | |||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1142 AGTTGGTGTGCCTAATTTTAAACAATATACATATAAATGAGCTTTGTTCTTTTT 1195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58031830020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5