BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483043 Length=970 Score E Sequences producing significant alignments: (Bits) Value AT2G40060.1 | Symbols: | Clathrin light chain protein | chr2:1... 1565 0.0 > AT2G40060.1 | Symbols: | Clathrin light chain protein | chr2:16726484-16728185 FORWARD LENGTH=1041 Length=1041 Score = 1565 bits (847), Expect = 0.0 Identities = 931/971 (96%), Gaps = 8/971 (1%) Strand=Plus/Plus Query 1 AGAGATGTCTGTCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 AGAGATGTCTGCCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 136 Query 61 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGACTCTTTCTCAGCCTACGACGGCTCAGT 120 ||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| | Sbjct 137 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGATTCTTTCTCAGCTTTCGACGGCTCACT 196 Query 121 CCAAGTCGATGACTCCGTCGACGATGTTTTTGCAGCGCCTTCTTCTGACTACGGTGCTTA 180 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 197 CCAAGTCGAGGACTCCGTCGACGATGTTTTTGCAGCGCCGTCTTCTGACTACGGTGCTTA 256 Query 181 CTCGAACGGTGACGGCGTCTTCGGATCCAACGGTGAACACGACGGTCCTATCTTGCCACC 240 ||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||| Sbjct 257 CTCCAACGGTGACGGCATCTTCGGATCCAACGGGGATCACGACGGTCCTATCTTGCCACC 316 Query 241 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACATAATGC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 317 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACAAAATGC 376 Query 301 AATTCAACTTGAAGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 360 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 AATTCAACTTGAGGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 436 Query 361 AGCTAATCAATACAAAGAAGAGTTCCATAAGAAGATTGAAGTAACTTGTCAAAACAACAA 420 |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 437 AGCTGATCAATACAAAGAAGAGTTTCATAAGAAGATTGAAGTAACTTGTGAAAACAACAA 496 Query 421 AGCAGCTAACAGGGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 480 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 AGCAGCTAACAGAGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 556 Query 481 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAGGTTCCAACAAT 540 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 557 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAAGTTCCAACAAT 616 Query 541 AGAGAAAAGAAGAGGAAAGAAAGAGCAACAAGACCCTAAGAAGCCATCAATCTCTGTGAT 600 ||||||||| |||||||| |||||||||||||| |||||||||||| || |||||||||| Sbjct 617 AGAGAAAAGGAGAGGAAAAAAAGAGCAACAAGATCCTAAGAAGCCAACAGTCTCTGTGAT 676 Query 601 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 677 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 736 Query 661 GCTCAAACACAACCCACCTTCTCACCTGAAGCTCACTTCTCAACCTCCATCGGATGAGGC 720 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 737 GCTCAAACACAACCCACCTTCTCACCTGAAACTCACTTCTCAACCTCCATCGGAGGAGGC 796 Query 721 GGCTGCTCCTCCAAAGAATGTTCTCGAAACCAAGCCCACTGAGGCGGTTACTGCTGCTTA 780 ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 797 GGCTGCTCCTCCAAAGAATGTTCCCGAAACCAAGCCCACTGAGGCAGTTACTGCTGCTTA 856 Query 781 AAAACCTC-TTTGGTTTTCTTATTCATTGCTTACATCTTGTGTGAATTCGGTCTTTGCAT 839 |||||||| |||| ||||||||||| |||||||||||| |||||||||| |||||||||| Sbjct 857 AAAACCTCCTTTG-TTTTCTTATTCGTTGCTTACATCT-GTGTGAATTCAGTCTTTGCAT 914 Query 840 TTCATTATGTGTTATAAACAGCTGAGAGATCTTATGGGTCATGTGTGTTATTAACATAAT 899 |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| Sbjct 915 TTCATTATGTGTTATAAACAGCTGAGAGATTTTATGGTTCATGTGTGTTATTAACATAAT 974 Query 900 TATGTCATATTGGAATGATAACTTTTTATGTTTGAATTCAGTCAGTTACCATTGAAAAGT 959 ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||| Sbjct 975 TATGTCATATTGGAATGATAACTTTTTATGTTT---T--AGTCAGTTACCATTGAATAGT 1029 Query 960 GGTTAATATCT 970 ||||||||||| Sbjct 1030 GGTTAATATCT 1040 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47471268915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5