BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483050
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photo... 1548 0.0
> AT2G40100.1 | Symbols: LHCB4.3 | light harvesting complex photosystem
II | chr2:16745803-16747400 FORWARD LENGTH=1122
Length=1122
Score = 1548 bits (838), Expect = 0.0
Identities = 965/1024 (94%), Gaps = 18/1024 (2%)
Strand=Plus/Plus
Query 1 ACTATTATTCTaaaatccaaaaaatcaaaaaCCTATATGTTATAAACATTGGAATCATCA 60
|||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 1 ACTATTATTCTAAAATCC----AA--AAAAA-CTATATGTTAT-AACATTGGAATCATCA 52
Query 61 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 112
Query 121 GTATCTTTGGGATCCGGATTCAAGATCCTAGACTTGGAACCGGTAGGATCCAAGCCCGGT 180
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 113 GTATTTTTGGGATCCGGATTCAAGATCCTAGACCTGGAACCGGTAGGGTCCAAGCCCGGT 172
Query 181 TCGGGTTCAGTTTCGGGAAAAAGAAACCGGCTCCACCACCAAAGAAATCAAGGCAGGTCC 240
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 173 TCGGGTTCAGTTTCGGAAAAAAGAAACCGGCTCCACCGCCAAAGAAATCAAGGCAGGTCC 232
Query 241 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 292
Query 301 GATCGATGATCGGTGACCGTGGATTTGATCCGTTCGGTTTAGGTAAACCGGCGGAGTATC 360
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 293 GATCGATGATCGGAGACCGTGGATTTGATCCGTTTGGTTTAGGTAAACCGGCTGAGTATC 352
Query 361 TTCAGTACGATTTCGACGGTCTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 420
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TTCAGTACGATTTCGATGGACTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 412
Query 421 TCGGGATCATCCAAGACTCGTCTGAGATCAAACCCACGCCGTTTCAGCCGTACACTGAAG 480
|||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 413 TCGGGATCATCCAAGAATCTTCGGAGATCAAACCGACGCCGTTTCAGCCGTACACTGAAG 472
Query 481 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGCTTG 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 473 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATCCATGGAAGGTGGGCCATGCTTG 532
Query 541 GCACTCTAGGTGCCATCGCCGTTGAGGCTCTCACCGGAATTGCATGGCAAGACGCCGGAA 600
|||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 533 GCACTCTAGGCGCCATCGCCGTAGAGGCTCTTACAGGAATTGCATGGCAAGACGCCGGAA 592
Query 601 AGGTGGAATTGGTGGAAGGATCGTCGTATTTGGGACAGCCATTGCCATTCTCTTTGACGA 660
|||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 593 AGGTGGAATTGGTGGAAGGATCATCGTATTTGGGACAACCATTGCCGTTCTCGTTGACGA 652
Query 661 CGTTGATATGGATAGAAGTGCTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAGC 720
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 653 CGTTGATATGGATAGAAGTGTTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAAC 712
Query 721 TTGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 780
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 772
Query 781 ATCCAGAGAAGTTGGACACCTTGAAGTTGGCGGAGATAAAGCACTCTCGTCTCGCTATGG 840
|||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||
Sbjct 773 ATCCAGAGAAGTTGGATACTTTGAAGCTGGCTGAGATAAAGCACTCTCGTCTCGCTATGG 832
Query 841 TTGCATTTCTTATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTATCAGCTTCC 900
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 833 TCGCATTTCTCATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTGTCAGCTTCC 892
Query 901 TCGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTACTTTTTTCaaaaaaaaaa 960
| |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 893 TTGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTA-TTTTATCAAAATAAAAT 951
Query 961 aTATACGTT-AAAAACTCTATGATGCATGTTA---TAT-C--ATAAATAAGTCGTTTATT 1013
||||| || ||||||| ||| |||||||||| ||| | ||||| ||||| ||||||
Sbjct 952 -TATAC-TTCAAAAACTGTATAATGCATGTTACGCTATACTTATAAAGAAGTCTTTTATT 1009
Query 1014 GTTT 1017
||||
Sbjct 1010 GTTT 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5