BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483058
Length=2946
Score E
Sequences producing significant alignments: (Bits) Value
AT2G40130.2 | Symbols: | Double Clp-N motif-containing P-loop ... 4372 0.0
> AT2G40130.2 | Symbols: | Double Clp-N motif-containing P-loop
nucleoside triphosphate hydrolases superfamily protein | chr2:16765920-16769268
FORWARD LENGTH=3037
Length=3037
Score = 4372 bits (2367), Expect = 0.0
Identities = 2698/2857 (94%), Gaps = 26/2857 (1%)
Strand=Plus/Plus
Query 52 TTATATATGGTCGCCGGCGATGCCAACGGCCGTGAATGTAGCGAAACAATGCTTAACGGC 111
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 92 TTATATATGGTCGTCGGCGATGCCAACGGCGGTGAATGTAGCGAAACAATGCTTAACGGC 151
Query 112 AGAAGCAGCTTACGCGTTAGAAGAGGCTGTGAACGTTGCACGTCGAAGAGGACACTCACA 171
||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 152 AGAAGCATCCTACGCATTAGAAGAAGCTGTGAACGTTGCACGTCGAAGAGGACACTCACA 211
Query 172 AACGACGTCGCTTCACGCAATCTCAGCTTTACTCTCTCTACCAACCTCAGTTTTACGTGA 231
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 212 AACGACGTCGCTTCACGCTATCTCAGCTTTACTCTCTCTACCAACCTCAGTCTTACGTGA 271
Query 232 CGCATGTGCTCGTGTTCGTAACTCTGCTTACTCTCCTCGTCTTCAGTTCAAAGCTTTAGA 291
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 272 CGCATGTGCTCGTGTTCGTAACTCTGCTTACTCTCCTCGTCTTCAATTCAAAGCTTTAGA 331
Query 292 TCTTTGCTTAAGTGTTTCTTTAGACCGGATCCAATCGGGTCAACAACTTGGATCCGATGA 351
|||||||||||| |||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 332 TCTTTGCTTAAGCGTTTCTTTAGACCGGATCCAGTCGGGTCATCAACTTGGATCTGATGA 391
Query 352 TTCACCACCTGTTTCAAACTCTCTTATGGCTGCAATCAAACGATCTCAAGCTCATCAACG 411
||||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 392 TTCACCACCTGTTTCTAACTCTCTAATGGCTGCAATTAAACGATCTCAAGCGCATCAACG 451
Query 412 TCGTTTACCTGAGAACTTCAGGATCTATCAAGAAATGTCACAGAGTCAGAACTC-GAATT 470
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 452 TCGTTTACCTGAGAACTTCAGGATCTATCAAGAAATGTCACAGAGTCAGAA-TCAGAACT 510
Query 471 CACTTTCTTGTGTTAAAGTGGAGCTTCGTCAGTTGATTCTTTCGATCTTGGATGATCCGG 530
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CACTTTCTTGTGTGAAAGTGGAGCTTCGTCAGTTGATTCTTTCGATCTTGGATGATCCGG 570
Query 531 TTGTGAGTCGGGTTTTTGGTGAAGCGGGTTTTCGGAGCTCCGAGTTAAAGCTTTCCATTA 590
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 TTGTGAGCCGGGTTTTTGGTGAAGCGGGTTTTCGGAGCTCCGAGTTAAAGCTTTCCATTA 630
Query 591 TTCGTCCTGTTCCTCATCTTCTCCGATATTCATCACAACAACCTCTGTTTCTTTGTAACG 650
|||| ||||||||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 631 TTCGACCTGTTCCTCATCTTCTTCGTTATTCATCACAACAGCCTCTGTTTCTCTGTAACC 690
Query 651 TAACCGGGAATCCTGAACCGAATCCGGTTCGATGGGGTTTCACCGTACCAAACC-GAAAT 709
||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||
Sbjct 691 TAACCGGGAATCCTGAACCGAATCCGGTTCGATGGGGTTTCACCGTACCAAGCCTG-AAT 749
Query 710 TTTAACGGAGATTCGGATTACCGGAGGATAAGCGCGGTTTTCATGAGGGAAAAAGGGAGG 769
||||||||||||| ||||||||||||||| ||||||||||||| || || |||||||||
Sbjct 750 TTTAACGGAGATTTGGATTACCGGAGGATTAGCGCGGTTTTCACGAAAGATAAAGGGAGG 809
Query 770 AATCCTCTGCTTGTTGGTGTATCGGCTTACGGTGTTCTAACCGGTTATTTAAATTCGCTT 829
||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 810 AATCCTCTGCTTGTTGGTGTATCAGCTTACGGTGTACTAACCAGTTATTTAAATTCGCTA 869
Query 830 GAGAAAAACCGAACCGACGGGATGATTCTACCGACGAAGCTTCACGGTCTAACCGCGGTT 889
|||||||||| |||||||||||||||||| |||||||||||||||||| |||| ||||||
Sbjct 870 GAGAAAAACCAAACCGACGGGATGATTCTCCCGACGAAGCTTCACGGTTTAACGGCGGTT 929
Query 890 AACATCGGTTCAGAAATCTCCGATCAAATCATCGTCAAATTCGATAAAACCTACACCGAC 949
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 930 AACATCGGTTCAGAAATCTCCGACCAAATCAGCGTCAAATTCGATAAAACCTACACCGAC 989
Query 950 ACTAGGTTTCATGATCTAGGGAAGCTTGCGGAGCAAGGTTCAGGACCTGGACTAATCTTG 1009
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 990 ACTAGGTTTCATGATCTAGGGAAGCTTGCAGAGCAAGGTTCAGGACCTGGACTACTCTT- 1048
Query 1010 A-ACTACGGTGATCTGAGAGTTTTCACTGATGGGGAAGGAAACGTACCGGCGGCGAATTA 1068
| ||||||||||||| || |||||||| | || ||||||||||||||||||||||||||
Sbjct 1049 ACACTACGGTGATCTTAGGGTTTTCACCAACGGCGAAGGAAACGTACCGGCGGCGAATTA 1108
Query 1069 CATCGTAAATC-GAGTTTCGGAGCTGTTACGGCGACACGGGAGAAGAGTGTGGTTGATCG 1127
|||||| |||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1109 CATCGTGAATCGGA-TTTCGGAGCTGTTGCGGCGACACGGGAGAAGAGTGTGGTTGATCG 1167
Query 1128 GAGCAACGACGAGCAACGACGTTTATGAGAAGATGTTGAGGAA-GTTTCCGAATGTGGAG 1186
|||| |||||||||||||| ||||||||||||||| ||| ||| ||||||||||||||||
Sbjct 1168 GAGCGACGACGAGCAACGAGGTTTATGAGAAGATGATGA-GAAGGTTTCCGAATGTGGAG 1226
Query 1187 AAAGATTGGGATTTGCAGTTACTCACCATCACTTCTCTTAAGCCTTGTTTGCCTCACCAC 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1227 AAAGATTGGGATTTGCAGTTACTCACCATCACTTCTCTTAAGCCTTGTTTGCCTCACAAC 1286
Query 1247 AAGTCCAGTTTGATAGGATCATTTGTTCCATTTGGTGGATTCTTCTCAACAACTCCTTCT 1306
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1287 AAGTCCAGTTTGATAGGATCATTTGTTCCGTTTGGTGGATTCTTCTCAACAACTCCTTCT 1346
Query 1307 GACCTGAAACTACCCTTCTCCGGTTTCAACAA-GGAAATCACTGGACCGGTTTCGTCAAT 1365
|| |||||||||||||||||||||||||| || ||||||||| ||||| ||||| |||||
Sbjct 1347 GAACTGAAACTACCCTTCTCCGGTTTCAA-AACGGAAATCACCGGACCCGTTTCTTCAAT 1405
Query 1366 CTCCGATCAGACCCAATCTACCTTGCCACCTTGGTTACAGATGACCACAAGAGCTGATTT 1425
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1406 ATCCGATCAGACACAATCTACCTTGCCACCTTGGTTACAAATGACCACAAGAACTGATTT 1465
Query 1426 AAACCAAAAATC---T-----GGT-GT-CAAGACCAAAGAAGGGTTGGAATCAGTTTGTG 1475
|||||||||||| | ||| || | ||||||||||||||||||||||||||||||
Sbjct 1466 AAACCAAAAATCAAGTGCCAAGGTCGTGC-AGACCAAAGAAGGGTTGGAATCAGTTTGTG 1524
Query 1476 GAGATAAGTCCACGAGCAGTGCTTCTGCATCGACCGGTTCAGCTAAATCTGTCACTACTG 1535
|| |||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||
Sbjct 1525 GAAATAAGTTCACGAGCAGTGCTTCTGCATCGACCTGTTCAGCTAAATCGGTCACCACTG 1584
Query 1536 ATCTGAATCTAAGGATATGTTCAGTCACTGCAGGATCCGGTCTCAAGAAGCATTTGGATA 1595
|||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1585 ATCTGAATCTTAGGGTAAGTTCAGTCACCACAGGATCCGGTCTCAAGAAGCATTTGGATA 1644
Query 1596 GCAAAGATTTTTCTCAGCCACAATCTGTGTCCTCCTATTGCTTGGATAATCCAAGGGACC 1655
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1645 GCAAAGATTTTTCTCAGCCACAATCTGTGTCCTCCTATTCCTTTGATAACCCAAGGGACC 1704
Query 1656 TCAGCGCAGAGAGCTTCAAGATTATTTACAGAAGATTAACCGATAGGGTTTCAGGGCAAG 1715
||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1705 TCAACGCAGAGAGTTTCAAGATTATTTACAGAAGATTAACCGATATGGTTTCAGGACAAG 1764
Query 1716 ATGAGGCTGCTAGAGTTATCAGCTGCGCATTGTCACAACCGCCTAAGATTGTCACTCGAA 1775
||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||
Sbjct 1765 ATGAGGCTGCTAGAGTTATCAGCTGTGCACTGTCACAACCGCCTAAGAGTGTCACTCGAA 1824
Query 1776 GAGATGTTTGGCTCAATTTGGTTGGGCCTGATACTGTAGGAAAGAGGAGAATGTCGCTTG 1835
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1825 GAGATGTTTGGCTTAATTTGGTTGGTCCTGATACTGTAGGAAAGAGAAGAATGTCGCTTG 1884
Query 1836 TCCTTGCTGAGATTGTGTATCAAAGCGAACACAGATTTATGGCCGTTGATCTTGGTGCCG 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1885 TCCTTGCTGAGATTGTGTATCAAAGCGAACACAGATTTATGGCCGTTGATCTTGGTGCCG 1944
Query 1896 CGGAGCATGGAATGAATGGTTGTGATGATGCGATGCGGTTGAGAGGAAAGACGATGGTGG 1955
||||||| |||||| |||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 1945 CGGAGCAGGGAATGGGCGGTTGTGATGATCCGATGAGGTTGAGAGGAAAGACGATGGTTG 2004
Query 1956 ATCATATCTTTGAAGTGATGTGTAGGAATCCTTTCTGTGTGGTTTTCCTTGAGAACATTG 2015
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2005 ATCATATCTTTGAAGTGATGTGTAGGAATCCTTTCTGCGTGGTTTTCCTTGAGAACATTG 2064
Query 2016 AAAAAGCTGACGAGAAGCTGCAGATAAGCTTGTCAAAGGCAATCGAGACCGGGAAGTTTA 2075
||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 2065 AAAAAGCTGACGAGAAGCTGCAGATGAGCTTGTCAAAGGCAATCGAAACTGGGAAGTTTA 2124
Query 2076 TGGATTCTCACGGGAGAGAAGTCGGTATCGGCAACACTATGTTTGTTATGACATCATCTT 2135
||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||
Sbjct 2125 TGGATTCACACGGGAGAGAAGTTGGTATCGGAAACACTATTTTTGTTATGACGTCATCTT 2184
Query 2136 CACCAGAAGATTCCGTAACAACAACATCTTATTCTGAAGAGAAACTATTGAGAGCCAAAG 2195
|| | ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2185 CA-C--AAGGTTCCGCAACAACAACATCTTATTCTGAAGAGAAACTATTGAGAGTCAAAG 2241
Query 2196 GAAGGCAAGTGGAGATATGGGTTGAAACTGTATCTAGTTTACCAATGGTGCGATCAGTTT 2255
||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||
Sbjct 2242 GAAGGCAAGTGGAGATAAGGATTGAAACTGTATCTAGTTTACCAATGGTGCGATCGGTTT 2301
Query 2256 ATGGCCCAACCTCGGTGAAGAAGAGGAAGCTGATGGGATTAGGGAAACTTCAGGAGACGA 2315
| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
Sbjct 2302 ACGGCCCAACCTCGGTGAACAAGAGGAAGCTGATGGGATTAGGGAATCTTCAGGAGACAA 2361
Query 2316 AAGATACTGTGGAGACCGTAAAACGGTTGAACAGAACAACTAATGGAGTTCTTGATCTGA 2375
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2362 AAGATACTGTGGAGAGCGTAAAACGGTTAAACAGAACAACTAATGGAGTTCTTGATCTGA 2421
Query 2376 ACCTTCCGGCTCAAGAAACTGAAATCGAGGAAAAAGATCATTGTGAAGAGAACTCAAACG 2435
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2422 ACCTTCCGGCTCAAGAAACCGAAATCGAGGAAAAATATCATTGTGAAGAGAACTCAAACG 2481
Query 2436 TTTGGTTAATGAAATTGAAGAATCACGAACGTCTCATTGAGGTTCCTTTCAAGCCTTTCG 2495
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2482 TTTGGTTAATGAACTTGAAGAATCATAAACGTCTCATTGAGGTTCCTTTCAAGCCTTTTG 2541
Query 2496 ATTTTGAAGGACTAGCTGaaaaaatcaaaaaGAGCGCAAAAGAAATTTTCGACAAGTGCG 2555
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 2542 ATTTTGAAGGACTAGCTGAAAAAATCAAAAAGAGCGTTAAAGAAAATTTCGACAAGTGCG 2601
Query 2556 TGAGATCGGATTGCTTGCTGGAGGTTGACCCTAAGATCATAGAACGATTGCTAGCGGCTG 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2602 TGAGATCGGATTGCTTGCTGGAGGTTGACCCTAAGATCATAGAACGATTGCTAGCGGCTG 2661
Query 2616 TTTATTTCTCAGATAGTAGAAAAGATATCAAAGAGTTGATGGAGAAAATAATGAGTCGAG 2675
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 2662 TTTATTTCTCAGATAGTAGAAAAGATATCAAAGAGTTGCTGGAGAATATAATGAGTCCAG 2721
Query 2676 TGTTCTTGAAAATTAAGGAAAGGTATGAAATCACTACTAGTTGTGTAGTAAAATTAGTTG 2735
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2722 TGTTCTTGAGAATTAAAGAAAGGTATGAAATCACTACTAGTTGTGTAGTAAAATTAGTTG 2781
Query 2736 GTCGAGATCTTGACATTTTTCTTGAGGATCAAATGGACTTGTTCTTTGTAAAATCTCAGT 2795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2782 GTCGAGATCTTGACATTTTTCTTGAGGATCAAATGGACTTGTTCTTTGTAAAATCTCAGT 2841
Query 2796 AGGTTAAAGAGAGCTTTATATGGAAAGTGTATCATATAAGGTAGAGTTAGTAATAGGTAT 2855
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2842 AGGTTAAAGAGAACTTTATATGGAAAGTGTATCATATAAGGTAGAGTTAGTAATAGGTAT 2901
Query 2856 TATTGTTCTTTTGTGTTGCTATACTATTATAATGTGT 2892
||||||||||||||||||||||||||| |||||||||
Sbjct 2902 TATTGTTCTTTTGTGTTGCTATACTATGATAATGTGT 2938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 146437306617
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5