BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483149 Length=588 Score E Sequences producing significant alignments: (Bits) Value AT2G40880.1 | Symbols: FL3-27, ATCYSA, CYSA | cystatin A | chr2... 760 0.0 > AT2G40880.1 | Symbols: FL3-27, ATCYSA, CYSA | cystatin A | chr2:17057402-17058122 FORWARD LENGTH=631 Length=631 Score = 760 bits (411), Expect = 0.0 Identities = 467/493 (95%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 1 ACCGACATGGCCAAAACCTACGAATCTGAAA-TTGTAAGAAGCATAATAAGTCTCTCTAT 59 ||||||||||||||||||||||||||||||| ||| ||||||| |||||| | ||||| Sbjct 1 ACCGACATGGCCAAAACCTACGAATCTGAAATTTG-AAGAAGC---ATAAGTTTGTCTAT 56 Query 60 TAAAGATGGAATCAAAAAAGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT 119 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 57 TAAAGATGGAATCAAAGACGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT 116 Query 120 TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGAAGCTAGGAGGCGTTC 179 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 117 TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGATGCTAGGAGGCGTTC 176 Query 180 ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC 236 Query 240 AAGAGCATAACAAACAACAGAACAAGGTTCTTGAGTTCAAGAAGATTGTAAAAGCAAGAG 299 |||| |||||||||||||||||||| |||||||||||||||||||||| |||||||| | Sbjct 237 AAGAACATAACAAACAACAGAACAAAATTCTTGAGTTCAAGAAGATTGTCAAAGCAAGGG 296 Query 300 AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCATA 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 297 AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCAGA 356 Query 360 CGAAGAACTTTGAAGCCAAAGTGTGGGTGAAGCCGTGGATGAACTTCAAACAGTTGCAGG 419 | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 357 CTAAGAATTTTGAAGCCAAAGTGTGGGTGAAGCCATGGATGAACTTCAAACAGTTGCAGG 416 Query 420 AGTTTAAGGAATCCTCTTCTTGAATTTCACTTGTTCAAATGTA-TGATTACAAATGCTCT 478 |||| |||||||| |||||||||||||||||||||||| | || |||||||||||||||| Sbjct 417 AGTTCAAGGAATCATCTTCTTGAATTTCACTTGTTCAAGT-TAATGATTACAAATGCTCT 475 Query 479 GAGAATAAT-AAT 490 |||| |||| ||| Sbjct 476 GAGAGTAATTAAT 488 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28281824761 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5