BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg483149

Length=588
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G40880.1 | Symbols: FL3-27, ATCYSA, CYSA | cystatin A | chr2...   760    0.0  


> AT2G40880.1 | Symbols: FL3-27, ATCYSA, CYSA | cystatin A | chr2:17057402-17058122 
FORWARD LENGTH=631
Length=631

 Score =  760 bits (411),  Expect = 0.0
 Identities = 467/493 (95%), Gaps = 8/493 (2%)
 Strand=Plus/Plus

Query  1    ACCGACATGGCCAAAACCTACGAATCTGAAA-TTGTAAGAAGCATAATAAGTCTCTCTAT  59
            ||||||||||||||||||||||||||||||| ||| |||||||   |||||| | |||||
Sbjct  1    ACCGACATGGCCAAAACCTACGAATCTGAAATTTG-AAGAAGC---ATAAGTTTGTCTAT  56

Query  60   TAAAGATGGAATCAAAAAAGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT  119
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  57   TAAAGATGGAATCAAAGACGTTCTGGATCGTTACTCTTCTTCTCTGTGGAACAATTCAAT  116

Query  120  TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGAAGCTAGGAGGCGTTC  179
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  117  TAGCGATTTGCAGATCAGAAGAGAAAAGCACAGAGAAGACGATGATGCTAGGAGGCGTTC  176

Query  180  ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC  239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  ATGATCTCCGAGGAAATCAGAACAGTGGAGAGATCGAGAGTCTCGCTCGATTTGCCATTC  236

Query  240  AAGAGCATAACAAACAACAGAACAAGGTTCTTGAGTTCAAGAAGATTGTAAAAGCAAGAG  299
            |||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||| |
Sbjct  237  AAGAACATAACAAACAACAGAACAAAATTCTTGAGTTCAAGAAGATTGTCAAAGCAAGGG  296

Query  300  AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCATA  359
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  297  AGCAGGTAGTTGCAGGAACGATGTACCACTTAACCCTAGAAGCAAAAGAAGGTGATCAGA  356

Query  360  CGAAGAACTTTGAAGCCAAAGTGTGGGTGAAGCCGTGGATGAACTTCAAACAGTTGCAGG  419
            | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  357  CTAAGAATTTTGAAGCCAAAGTGTGGGTGAAGCCATGGATGAACTTCAAACAGTTGCAGG  416

Query  420  AGTTTAAGGAATCCTCTTCTTGAATTTCACTTGTTCAAATGTA-TGATTACAAATGCTCT  478
            |||| |||||||| |||||||||||||||||||||||| | || ||||||||||||||||
Sbjct  417  AGTTCAAGGAATCATCTTCTTGAATTTCACTTGTTCAAGT-TAATGATTACAAATGCTCT  475

Query  479  GAGAATAAT-AAT  490
            |||| |||| |||
Sbjct  476  GAGAGTAATTAAT  488



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28281824761


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5