BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483163 Length=1206 Score E Sequences producing significant alignments: (Bits) Value AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding ... 1557 0.0 AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding ... 163 3e-39 > AT2G40960.1 | Symbols: | Single-stranded nucleic acid binding R3H protein | chr2:17095522-17097454 FORWARD LENGTH=1257 Length=1257 Score = 1557 bits (843), Expect = 0.0 Identities = 1035/1127 (92%), Gaps = 16/1127 (1%) Strand=Plus/Plus Query 81 CTCATGGACACAGCCTTGACCTCAGAAACAGGTTGTCCCGTTATGGCCGATAAGGGATTC 140 |||||||||||||| |||||||||||| |||| ||| ||||||| ||||||||||||||| Sbjct 113 CTCATGGACACAGCATTGACCTCAGAATCAGGCTGTGCCGTTATAGCCGATAAGGGATTC 172 Query 141 ACGGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCCAACGATTTTG 200 | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 173 AATGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTCTAACGATTTTG 232 Query 201 CGGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTATTCGAGTTC 260 ||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 233 CGGATGGAACTTGATGTTCAGAGGTTCTTGCAGAGCCCTGATCAGCAGCAATTCGAGTTC 292 Query 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320 ||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| Sbjct 293 CAGCATTTCCCTACATCATACCTCCGTTTTGCGGCTCATCGTGTTGCTAATCACTATGGA 352 Query 321 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAACGGGAGCAGAATTTTCGTGACT 380 |||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| Sbjct 353 CTAATTACATCAGTTCGAGATGGTGGTGCAGATGGTAATGAGAGCAGAATTGTCGTGACT 412 Query 381 AAATCTACTGAGAGCAGTTTTCCCGCTGTTCGGCTATCTGAAATCCCTGCT-AAACAATC 439 ||||||| ||| ||||| ||||| |||| ||| |||||||||||||||| | ||||| || Sbjct 413 AAATCTAGTGATAGCAGATTTCCTGCTGCTCGACTATCTGAAATCCCTG-TGAAACAGTC 471 Query 440 AGAGATTGGCAAGTTCGAGCACATGAAAGTTGCTATAAATCCCAGACCTTCTAAAGGATC 499 ||| | ||||||||| ||||| |||||||||| |||||| || |||||| |||||||||| Sbjct 472 AGAAACTGGCAAGTTTGAGCATATGAAAGTTGTTATAAAGCCAAGACCTACTAAAGGATC 531 Query 500 TGGTATGGAAGCTGATGAACTGGAAAAGAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 559 ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 532 TGGAATGGAAGGTGATGAACT------GAAAGGTGGTCTTCTGAAAAGTGTTGAAGAGAG 585 Query 560 GAAAGAAGATTACGACAGGGCTCGAGCTCGCATATTTAACGGTCTTGCGGACCTTGATTG 619 ||||||||||||||||||||||||||| ||||||||||||||||||| | || ||||||| Sbjct 586 GAAAGAAGATTACGACAGGGCTCGAGCACGCATATTTAACGGTCTTGTGAACATTGATTG 645 Query 620 TAATGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAAATGTAGTCCTAGCAGAGATGA 679 ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| Sbjct 646 TAACGATTCTTCATCTGAAACTAATCCTTGGAGGGTGAATTGTAGTTCTAGCAGAGATGA 705 Query 680 AAATCAAGTGTTGTAGAATGGTAATATCGAGGCAGACAAGAACCATATCACCAGGGAGAG 739 ||||||||||||| |||||||||||||||| |||||||||||| ||||| | ||| |||| Sbjct 706 AAATCAAGTGTTGAAGAATGGTAATATCGAAGCAGACAAGAACAATATCTCTAGGAAGAG 765 Query 740 CATTCCTGCATCTCGTATTGCAATTATCAGAGACAGAGAGAAAGATCGGTATGATCCTGA 799 || |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||| Sbjct 766 CAATCCTGCATCTCGTATTGCAATTCTCAGAGACAGAGAGAAAGATCGATATGACCCTGA 825 Query 800 CTATGACCGCAGCTATGATAGGTACATTAGTAACCTCCCAGTTGATCAAAATTTCTGCTT 859 ||||||||||||| || | ||||||||||||||||||||||| ||||||||||| ||| | Sbjct 826 CTATGACCGCAGCAATTACAGGTACATTAGTAACCTCCCAGTCGATCAAAATTTATGCGT 885 Query 860 GGCACACTTCAATAGTCAGAAAATGGGGACACCAATTTATGATCTGGGATTTAGCGGGTA 919 |||||||||||| | ||||| ||||||||||||||| |||||| |||||||||| ||||| Sbjct 886 GGCACACTTCAACATTCAGACAATGGGGACACCAATCTATGATATGGGATTTAGAGGGTA 945 Query 920 TAGCCAAAATCCAAGTGGTGCTGCTTCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 979 ||| ||||| || | || | ||||||||||||||||||||||||||||||||||| Sbjct 946 TAG------TCCAACTGCTCCTCCATCTCTTAACTTGGGTCAACATTCTGTCATGAGCCC 999 Query 980 CTACGTCACCACGGGTTTAAACCAGCCTTCAATG-GATGCTGCTATGTACATGCAATGGC 1038 || ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1000 CTGCGTCACCACAGGTTTAAACCAGCCTTCAA-GAGATGCTGCTATGTACATGCAATGGC 1058 Query 1039 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACACCCCTTTTC 1098 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1059 CAAATGCAGCAGCTGTGATGTATACTCATTCATATGACCACTTCAGAAACTCCCCTTTTC 1118 Query 1099 AGGCGCAGTTCTATCCGCAGCCCCTTAGCTTCGATTACATGCAGAACCGGTAATCCCTTT 1158 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 1119 AGGCGCAGTTCTATCCGCAGCCCCTTAGTTTCGATTACATGCAGAACCGGTAATTACTTT 1178 Query 1159 TCTCATCATGGCTAATGATTTGTGTAATCCAAATTTTGAGACAGTTT 1205 ||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct 1179 TCTCATCATGGCTAAGGATTTGTGTAATCCAGATTTTGAGACAGTTT 1225 > AT5G05100.1 | Symbols: | Single-stranded nucleic acid binding R3H protein | chr5:1505122-1507224 REVERSE LENGTH=1598 Length=1598 Score = 163 bits (88), Expect = 3e-39 Identities = 188/235 (80%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 143 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAAAACCCTCGACATCGTC-CAACGATTTTGC 201 |||||||||||||||||||||||||||||| |||||||| ||||||| || | ||||||| Sbjct 314 GGTGGATCCTTTTTTGGTCGAGGCTCTTCAGAACCCTCGTCATCGTCTCACC-ATTTTGC 372 Query 202 GGATGGAACTTGATATTCAGAGGTTCTTCCAGAGCCCTGATCAGCAGCTAT-TCGAGTTC 260 | ||||| |||||||| |||| |||||| || || || || ||||| | || | |||||| Sbjct 373 GTATGGAGCTTGATATACAGAAGTTCTTTCAAAGTCCAGAGCAGCAACAATAT-GAGTTC 431 Query 261 CAGCATTTCCCTACATCATACCTCCGTCTTGCGGCCCATCGTGTTGCTAATCATTATGGA 320 |||| ||| |||||||| || || |||||| || || ||||||||| | ||||| || Sbjct 432 CAGCCTTTGCCTACATCTTATCTTCGTCTTATTGCTCACCGTGTTGCTCAGCATTACGGG 491 Query 321 CTAATTAC-ATCAG-TTC-GA-GATGGTGGTGCAGATGG-TAACGGGAGCAGAAT 370 ||| |||| | | | || || | |||||||| ||||| | | |||| |||||| Sbjct 492 CTATTTACCA-CTGCTTTAGAAGGTGGTGGTGTTGATGGCTCA-GGGAACAGAAT 544 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59236643100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5