BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483168
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41010.1 | Symbols: ATCAMBP25, CAMBP25 | calmodulin (CAM)-bi... 1109 0.0
> AT2G41010.1 | Symbols: ATCAMBP25, CAMBP25 | calmodulin (CAM)-binding
protein of 25 kDa | chr2:17113866-17114804 REVERSE LENGTH=939
Length=939
Score = 1109 bits (600), Expect = 0.0
Identities = 789/877 (90%), Gaps = 25/877 (3%)
Strand=Plus/Plus
Query 1 ATGGTGACTTCCGAGGGATTAGCAAGCGTTGATTCATGGTTATATCGCCAAGGTTTCAAC 60
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 74 ATGGTGACTTCGGAGGGATTAGCAAGCGTTGATTCTTGGTTATATCGCCAAGGTTTCAAC 133
Query 61 GTTGATTCATGGTTGCTCTCTGATGCCTTCTCTCACGACAACGATCTGCTCGCCAGAGCT 120
||||||||||||||||| |||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 134 GTTGATTCATGGTTGCTTTCTGATACCTTCTCTCACGACAACGATTTGCTCGCAAGAGCT 193
Query 121 CTACATACCACCGTCACAGCAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 180
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CTCCATACCACCGT--CA-CAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGAT 250
Query 181 TCAGCCGCAGTTTCTCACCCTTCCTCCACTACTAACACACTCTCCTCTAACGTCTCCTGT 240
|| |||| ||||||||||||| || | | ||||||||||||||||||| ||||||| ||
Sbjct 251 TCCTCCGCTGTTTCTCACCCTT-CTTC-C-ACTAACACACTCTCCTCTACCGTCTCCGGT 307
Query 241 GGATCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACT 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GCTTCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACC 367
Query 301 GAAGGTAAAGCCACCAAGCGCCGTGCTCGTGCTTCCAAGAAATCTCAGACGACTTTTATA 360
|| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 368 GACGGTAAAGCCGCCAAGCGCCGCGCTCGTGCTTCCAAGAAATCTCAGACTACTTTCATA 427
Query 361 ACGGCGGATCCGTCCAATTTTCGCCAGATGGTTCAGCAAGTGACCGGCTCTAGGTACATC 420
||||||||||||||||| ||||| |||||||||||||||||||| ||| | | |||||||
Sbjct 428 ACGGCGGATCCGTCCAACTTTCGTCAGATGGTTCAGCAAGTGACTGGCGCCAAGTACATC 487
Query 421 GATGA-T-T-CTTCCTTCGGGATGTTCGATCCGATTGTCAAGCCAGAGCCGCTTAGGCTC 477
||||| | | ||||||| || || |||||||||||||||||||| |||||||||||| ||
Sbjct 488 GATGACTCTTCTTCCTTTGGTATTTTCGATCCGATTGTCAAGCCGGAGCCGCTTAGGTTC 547
Query 478 GTTAACCAACTGCCTTGTGGTC-TGTCGGATCGATCCACGGCGGTTCCAATGCTCGATAC 536
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| ||
Sbjct 548 GTTAACAAACTGCCTTGTGGTCCT-TCGGATCGATCCACGGCGGTTCCAATGCTCGACAC 606
Query 537 ATCGGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGGAACGCCTACTCCGC 596
||| ||||||||||||||||||||||||||||||||||||||||| || || | |||||
Sbjct 607 ATCAGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGAAATGCTTTCTCCGG 666
Query 597 TG-CTA-CGGGAGT--AGGATTAACTTCGGGGAAGCCAAATGCAACAGCGGACGCAGGTG 652
| | | | | ||| ||||||| | ||||||||||||| |||||| || ||| | ||||
Sbjct 667 TAAC-AGCAGCAGTGTAGGATTACCGTCGGGGAAGCCAAGTGCAACGGCCGACCCCGGTG 725
Query 653 TTTCTGCCGAGGATTTTGAAAATTACCCAACATTTCCAACGCTTGAATCGTGGAAAGTAA 712
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| || |
Sbjct 726 GTTCTGCCGTGGAGTTTGATAATTACCCAACATTTCCAACGCTTGAATCGTGGAAGGTTA 785
Query 713 TGTGATCT-TGT-TTT-AGTTTTAGACGTAATCTTTAACTTTTTAGGCTTGTTTTCTTTG 769
|||||||| | | ||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 786 TGTGATCTGTTTCTTTCAGTCTTAGACGTAATCTTTAACTTTTTAGGTTTGTTTTCTTTG 845
Query 770 CATCTCCT-CATGAATAATCTTGTTCATAGTTTTTCTTTATCGATGTAATGGATCAAATC 828
|||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 846 CATC-CCTTCATGAATAATCTTGTTCATAGTTTTTGTTTATCGATGTAATGGATCAAATC 904
Query 829 T-ATGCTCTATTTTGACTTTAAAATTATTTAGCGGAT 864
| | | ||| ||| |||||||||| ||||||| ||||
Sbjct 905 TGA-GTTCT-TTT-GACTTTAAAACTATTTAGAGGAT 938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42146449333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5