BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483180 Length=970 Score E Sequences producing significant alignments: (Bits) Value AT2G41120.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1467 0.0 AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-1714... 176 3e-43 > AT2G41120.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | chr2:17141275-17142457 REVERSE LENGTH=1003 Length=1003 Score = 1467 bits (794), Expect = 0.0 Identities = 917/976 (94%), Gaps = 10/976 (1%) Strand=Plus/Plus Query 1 TTTGACTTTGATAATGGCACTTTCTCCGAAACATttccaggttccttcatctttcacgct 60 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 26 TTTGACTTTGATAATGGCAGTTTCTTCGAAACATTTCCAGGTTCCTTCATCTTTCACGCT 85 Query 61 tcctccatcttcttccttcagctccttaattccttcttctccactctctgttacttcttc 120 |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||| Sbjct 86 TCCTCCATCTTCTTTCTTCAGCTCCTTAATCCCTTCTTCTCCAATCTCTGTTACTGCTTC 145 Query 121 AACGATTCGAGCCTCCACAAGATTTAGCTCCATACGCGTCCGTTTCAGTCGACGATCGAT 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || Sbjct 146 AACGATTCGAGCCTCCACAAAATTTAGCTCCATACGCGTCCGTTTCAGTCGAAGATCAAT 205 Query 181 CGTCAGATACAATGACCACGCCGGAGAAGACGAAGAAGATAGTGACGAGGATAAGGAAGA 240 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 206 CGTCAGATACAACGACCACGCCGGAGAAGACGAAGAGGATAGTGACGAGGATAAGGAAGA 265 Query 241 AGATTGGAGTTTTGAGGAAGCAGTAACTCTCTTCAACAAGAGAGATTATTACAAAAGTCA 300 | ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 266 ATATTGGAGCTTTGAGGAAGCAGTGACTCTCTTCAACAAGAGGGATTATTACAAAAGTCA 325 Query 301 CGACGCGCTTGAAGCTCTTTGGATTCAAGCTGAAGAACCAACTCGTACCTTAATCCATGG 360 ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 326 TGACGCGCTTGAAGCTCTTTGGATTCAAGCAGAGGAACCAACTCGTACCTTAATCCATGG 385 Query 361 AATTCTTCAATGTGCCGTTGGATTTCACCATCTCTTCAACAGCAACCATAAAGGAGCGAT 420 ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 386 AATTCTTCAATGTGCTGTTGGATTTCACCATCTATTCAACAACAACCATAAAGGAGCGAT 445 Query 421 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGGTGGACCGTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 446 GATGGAGTTAGGAGAAGGAGTATGTAAGCTAAGGAAGATGAATTTCGAAGACGGACCGTT 505 Query 481 TCACGAATTCGAACGAGATGTTTCGGCCGTTCTTGAATTCGTTTATCAAACTCAGCTCGA 540 ||| |||||||| |||||||| || || ||||||||||||||||||||||||||||| || Sbjct 506 TCATGAATTCGAGCGAGATGTCTCCGCAGTTCTTGAATTCGTTTATCAAACTCAGCTTGA 565 Query 541 ACTCGCTGCTTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 600 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 566 ACTTGCTGCCTGTTCAGAAGATATGTGTTTGACGATGGATCAATCAGACAGATCGTATCA 625 Query 601 ACTCTTGGGTGGTTATGCAGCGGGACAGAGTATATACAGCTTAGAGACTCTGGTTGACTT 660 |||||| |||||||||||||| ||| ||||||| ||||||||||||||| || ||||||| Sbjct 626 ACTCTTAGGTGGTTATGCAGCTGGAGAGAGTATTTACAGCTTAGAGACTGTGCTTGACTT 685 Query 661 CAACAATGGAATGTCTGAGAAAACTTCTATACTCTTCTCTCCTTTG-AGTTCATCGTCTG 719 |||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| Sbjct 686 CAACAATGGAATGTCTGAGACAACTTCTATACTCTTCTCTCCTTTACA-TTCATCGTCTG 744 Query 720 AGCCAACACGGGTTAAGCTCCCTACC-TTAACCGCAACCGATAAGCATCTTCTTGCTTTT 778 ||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| | Sbjct 745 AGCCAACTCGGGTTAAGCTCCCTACCCTTA-CCGCAACCGATAAGCATCTTCTTGCTTCT 803 Query 779 ACATACGACCAGAGATTCTGAAGAGAATGATCAAATAAGAAGATAATAGAAGA---TCTC 835 ||||||||| | ||||||| |||||||||||||| || ||||||||||||||| |||| Sbjct 804 ACATACGACGACAGATTCTAAAGAGAATGATCAA-TACGAAGATAATAGAAGAAGATCTC 862 Query 836 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTATCAATAACATGAACAATGAGTCA 895 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 863 ATTACTGTTATATTTCAAGAATCAGGTTCTGAACCTGTCAATAACATGAACAATGAGTCA 922 Query 896 TTTAGACAAGAAG-TAAAAACACATAACACCCCTGTCTTTTTAACCACCAAAAACCAGCC 954 ||||||||| ||| ||||||||||||||| |||||||||||||||| |||||||||||| Sbjct 923 TTTAGACAA-AAGGTAAAAACACATAACATTCCTGTCTTTTTAACCAGCAAAAACCAGCC 981 Query 955 ATGAATGAAATTTTAG 970 |||||||||||||||| Sbjct 982 ATGAATGAAATTTTAG 997 > AT2G41110.2 | Symbols: CAM2 | calmodulin 2 | chr2:17140229-17141393 FORWARD LENGTH=837 Length=837 Score = 176 bits (95), Expect = 3e-43 Identities = 108/114 (95%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 858 CAGGTTCTGAACCTATCAATAACATGAACAATGAGTCATTTAGACAAGAAG-TAAAAACA 916 |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 837 CAGGTTCTGAACCTGTCAATAACATGAACAATGAGTCATTTAGACAA-AAGGTAAAAACA 779 Query 917 CATAACACCCCTGTCTTTTTAACCACCAAAAACCAGCCATGAATGAAATTTTAG 970 ||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 778 CATAACATTCCTGTCTTTTTAACCAGCAAAAACCAGCCATGAATGAAATTTTAG 725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47471268915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5