BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483189 Length=704 Score E Sequences producing significant alignments: (Bits) Value AT2G41200.1 | Symbols: | unknown protein; Has 26 Blast hits to... 1088 0.0 > AT2G41200.1 | Symbols: | unknown protein; Has 26 Blast hits to 26 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17171625-17173131 FORWARD LENGTH=720 Length=720 Score = 1088 bits (589), Expect = 0.0 Identities = 671/709 (95%), Gaps = 12/709 (2%) Strand=Plus/Plus Query 1 aaaaaaaGAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 60 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AAAAAAACAAGAAGAAGGAAGTTATCACAATATGGGTCAAGCTCTCAATACCGCAAAAGG 61 Query 61 GAAAGGAGAGGTAGACG-GAAAAGACTTGGAAGCTATGGTTGAAAATTGCTACCGCAAAC 119 |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| Sbjct 62 TAAAGGAGAGGTAGACGCG-AAAGACTTGGAAGCTATGGCTGAAAATTGCTACCGCAAAC 120 Query 120 GCTTAGAAGAACAAAATGACGATCAAGAATGGT-CTTTCGGCGACTTCTACCGCATTGTG 178 ||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 121 GCTTAGAAGAAAAAAATGACGATCAAGAATGGTCCTTT-GGCGACTTCTACCGCATTGTG 179 Query 179 GCTGAAGCTGTCGAGGAAATTAATAGAAGACTCGGTGGTACACAACTTAAGGTGCCAAGT 238 |||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct 180 GCTGAAGCAGTCGAGGAAATTAACAGAAGACTCGGTGGCACTCAACTTAAGGTGCCAAGT 239 Query 239 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGGAGGGGAAGAAGCTATCG 298 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 GTTGAGAAACTACAACAAGCTTATGAGATACACAATCTCGGGCAGGGGAAGAAGCTATCG 299 Query 299 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATTGGAGCTGGGTTCACCGGCGTC 358 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 300 AAGGACGAGTTTCAGAAGCTTCTTCAAGAGGTTTTAATCGGAGTTGGGTTCACCGGCGTC 359 Query 359 GGAGGAGTAAAAGAGTTTCTACTATTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 418 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 360 GGAGGAGTAAAGGAATTTCTACTTTTCATCTTCGGAGTTCCTGCGATCGCCGTCTTCATT 419 Query 419 AAGAACCGTATAGCTCCGACGTCCATTCCCAACGACTTGTTTATCCCCGCCATCACATCC 478 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 420 AAGAACCGTATAGCTCCGACGTCCGTTCCCAACGACTTGTTTATCCCCGCCATCACTTCC 479 Query 479 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGA---CTCTACTAATTGTTTGAT 535 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 480 GCCACCGTCTTCCTCCTCGCCAAGCTCAATAAGATATGAAGTCTCTACTAATTGTTTGAT 539 Query 536 CCTTTCGAGCTTTGCTTTGTTTTCTTAATTTATATTGGTGATTTGATAATATGTGTGTGG 595 |||||||||||||||||||||| || ||||| ||||||||||||||| |||||||| || Sbjct 540 CCTTTCGAGCTTTGCTTTGTTTGCTAAATTTGTATTGGTGATTTGATTATATGTGTTTG- 598 Query 596 AATACTCGGTGAAGCTTAAAGTTTCACTCTTTGAGTTCACTTACGT-GATTGATGAAAAG 654 | ||| ||| ||||||||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 599 A-TACACGGAGAAGCTTAAAGTTTCACTCTTTGAGTTCATTTAC-TAGATTGATGAAAAG 656 Query 655 GaaaaaaaaaaTGAACTTATGTTGTTCGACAGAATGCCTCAGTGAGTTT 703 |||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 657 GAAAAAAAAA-TGAACTTATGTTGTTCGACAGAATGCCTCAACGAGTTT 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34108985813 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5