BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483270
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
AT2G41870.1 | Symbols: | Remorin family protein | chr2:1747086... 1223 0.0
AT3G57540.1 | Symbols: | Remorin family protein | chr3:2130139... 320 2e-86
> AT2G41870.1 | Symbols: | Remorin family protein | chr2:17470866-17472936
REVERSE LENGTH=1495
Length=1495
Score = 1223 bits (662), Expect = 0.0
Identities = 877/978 (90%), Gaps = 25/978 (3%)
Strand=Plus/Plus
Query 354 TTCTTAAACCCTAATTCTCAGATTATGCTGACTCTTTACGATCATGAAAGGTCACCGGAC 413
||| ||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 394 TTCCTAAACCCTATTTCTCAGATTATGCTGACTCTTTACCATCAAGAAAGGTCACCGGAC 453
Query 414 GCCACAAGTAACCACCAGGATGATGAGACGACGGAGACTGTGGTGAGAGACA-TCCACGC 472
||||||||||| | | | ||||||||| | ||||||||||| ||||| | |||||||
Sbjct 454 GCCACAAGTAATGATC--G-CGATGAGACGCCAGAGACTGTGGTTAGAGA-AGTCCACGC 509
Query 473 GGTAACTCCAGCTCCGGAGGATAATTCCCGGACGATGACGGCGACGACGTTGCCTCCACC 532
| |||||||||| ||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct 510 GCTAACTCCAGCGCCGGAGGATAATTCCCGGACGATGACGGCGACG-C--TACCTCCACC 566
Query 533 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCACGGTCAACAACGACCATGAGCGAAGGAGC 592
||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||
Sbjct 567 GCCTGCTTTCCGAGGCTATTTTTCTCCTCCAAGGTCAGCGACGACGATGAGCGAAGGA-- 624
Query 593 TTCTTCCGGCGAAAACTTCACAACAATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 652
|| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 625 ----------GAGAACTTCACAACTATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCGG 674
Query 653 CTCCTCCATGGAAAACAATGAACCAACGGCTCGTGACGTCACACAGCGTGAAGATGAAAG 712
||||||||||| ||||| |||| || | ||||||||||||| |||||||||||||| ||
Sbjct 675 ATCCTCCATGGAGAACAACGAACTAATGACTCGTGACGTCACGCAGCGTGAAGATGAGAG 734
Query 713 ACAACACGACTTGTTGAGGATCCTCGAGGAGAGGGATCAAGAAGACGAGACGAACCCTTT 772
|||| |||| ||| |||| |||| |||||| | |||||| ||||| || ||||| |||||
Sbjct 735 ACAAGACGAGTTGATGAGAATCCACGAGGACACGGATCATGAAGAGGAAACGAATCCTTT 794
Query 773 GGCAATCGTTCCGGACCAGTATCCGGGTTCGGGTTTGGATCCTGGAAGTGAGATTGGGCC 832
|||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct 795 AGCAATCGTGCCGGATCAGTATCCTGGTTCGGGTTTGGATCCTGGAAGTGATAATGGGCC 854
Query 833 GGGTCAGGGTCGAGTTGGGAT-GACGGTGCAAATAGTGAAGAGGGAAGAGGTTGAGGCGA 891
||||||| |||| |||||| | ||||||||||| ||| |||||||||||||| || ||||
Sbjct 855 GGGTCAGAGTCGGGTTGGG-TCGACGGTGCAAAGAGTTAAGAGGGAAGAGGTGGAAGCGA 913
Query 892 AGATAACGGCGTGGCAGACGGCAAAATTGGCAAAGATCAATAACAGGTTTAAGAGGGAAG 951
|||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||
Sbjct 914 AGATAACGGCGTGGCAGACGGCAAAACTGGCTAAGATTAATAACAGGTTTAAGAGGGAAG 973
Query 952 ACACCGTTATTAACGGTTGGGTTAATGAACAAGTCCACAAGGCCAATTCTTGGATgaaga 1011
|| ||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||
Sbjct 974 ACGCCGTTATTAACGGTTGGTTTAATGAACAAGTTAACAAGGCCAACTCTTGGATGAAGA 1033
Query 1012 aaattgagaggaagctagaggagaaaaaagcaaaagcaatggagaaaacgcaaaaCAATG 1071
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1034 AAATTGAGAGGAAGCTAGAGGAGAGAAAAGCAAAAGCGATGGAGAAAACGCAAAACAATG 1093
Query 1072 TGGCGAAAGCGCAGAGGAAAGCGGAAGAGAGAAAAGCGACGGCAGAGGCAAAGAGAGGGA 1131
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1094 TGGCGAAAGCGCAGAGGAAAGCGGAGGAGAGAAGAGCGACGGCAGAGGCAAAGAGAGGGA 1153
Query 1132 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCGTTGGACGTCCTCCTG 1191
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1154 CAGAGGTTGCAAAAGTAGTTGAAGTTGCTAATCTCATGAGAGCCCTTGGACGTCCTCCTG 1213
Query 1192 CCAAACGCTCCTTCTTCTCTTTCTCCTAGTTTTTAGTTATATCAAACCATTAAACTAAAC 1251
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1214 CCAAACGCTCCTTCTTCTCTTTCTCCTAATTTTTAGTTATATCAAACCATTAAATTAAAC 1273
Query 1252 ATTACTTATTGTATATA-AGTTAGTAAAGAAAGAGGCCA-TTTTATAGCTTATATACACA 1309
| |||| || ||||| |||||||||| |||| ||| | |||||||||| || ||||||
Sbjct 1274 AGTACTCGTTATATATCTAGTTAGTAAACAAAGGGGC-AGTTTTATAGCTCATGTACACA 1332
Query 1310 TAGTTGAGAGTGTAGTAC 1327
|| |||||||||||||||
Sbjct 1333 TAATTGAGAGTGTAGTAC 1350
Score = 429 bits (232), Expect = 3e-119
Identities = 322/363 (89%), Gaps = 15/363 (4%)
Strand=Plus/Plus
Query 1 TTGTTTTGCCCTTTAGAAATCACCGCAAGGTTTTA-GATTG-AAAAATGTGAAAAATTTA 58
||||||||| |||||||||| |||| | |||| | || ||||||||||||||| |
Sbjct 8 TTGTTTTGCTCTTTAGAAATTACCG--A---TTTACG-CTGAAAAAATGTGAAAAATACA 61
Query 59 GTCGATCGCATTATTTTTGTCTCTAGCTAATCATTCATAAACAGGCATGTCTCCGAAGGT 118
||||||||||||| ||| || |||||||||||||||| ||| ||||||||||||||||
Sbjct 62 ATCGATCGCATTATCTTTATCCCTAGCTAATCATTCATGTACAAGCATGTCTCCGAAGGT 121
Query 119 TAAAAGCAGTCGCTATTTTACCGGACCAACGTAGTTTTCACAAAGTGGTGGTCCGTTGTC 178
||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 122 TAAAAGCAGTCGCTA-TTTACCGGACCAACGTAGTTTTCTCGAAGTGGTGGTCCGTTGTC 180
Query 179 ATATTTTAAAATTATCACCTTCTTGAGAATTCTACATTTTAATCCTTTTTGTCGTGTAGT 238
|||||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 181 ATATTTTAAATTTATCACCTTCTTGAGAATTCCACATTTTTATCCTTTTTGTCATGTAGT 240
Query 239 G-ATA-TTGTTCCTCTAAATCTAATTAAAGTCGGAACTAAAA-CCTTTGAACCTATTTAG 295
| ||| || ||||||| || ||||||||| || ||| |||| |||||| ||| | ||||
Sbjct 241 GTATATTTTTTCCTCT-AACCTAATTAAAATCAAAAC-AAAATCCTTTG-ACCCAATTAG 297
Query 296 CTTCGCGAGATATCAGAAGAGATCAAACTACTTTGATCAGACCATGATCTTCTTCTTCTT 355
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CTTCGCGATATATCAGAAGAGATCAAACTACTTTGATCAGACCATGATCTTCTTCTTCTT 357
Query 356 CTT 358
|||
Sbjct 358 CTT 360
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1339 ATTCAACGTAATTTTGATTTTTGAATAATGCGTTTG 1374
||||||| ||||||||||||||||||||||||||||
Sbjct 1420 ATTCAACTTAATTTTGATTTTTGAATAATGCGTTTG 1455
> AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301397-21303061
REVERSE LENGTH=1254
Length=1254
Score = 320 bits (173), Expect = 2e-86
Identities = 305/369 (83%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 856 CGGTGCAAATAGTGAAGAGGGAAGAGGTTGAGGCGAAGATAACGGCGTGGCAGACGGCAA 915
||||||| | |||||||| |||||||| || || ||||||||||||||||| ||||| |
Sbjct 664 CGGTGCAGAGGGTGAAGAGAGAAGAGGTGGAAGCAAAGATAACGGCGTGGCAAACGGCGA 723
Query 916 AATTGGCAAAGATCAATAACAGGTTTAAGAGGGAAGACACCGTTATTAACGGTTGGGTT- 974
| |||| ||||| ||||| ||||||||||| ||||| ||||||||||||||| ||||
Sbjct 724 AGGTGGCTAAGATTAATAATAGGTTTAAGAGACAAGACGCCGTTATTAACGGTT-GGTTG 782
Query 975 AATGAACAAGTCCACAAG-GCCAATTCTTGGATgaagaaaattgagaggaagctagagga 1033
||||| || || || || || || ||||||||||||||||| |||||||| || || ||
Sbjct 783 AATGAGCAGGTTCA-TAGAGCTAACTCTTGGATGAAGAAAATCGAGAGGAAACTGGAAGA 841
Query 1034 gaaaaaagcaaaagcaatggagaaaacgcaaaaCAATGTGGCGAAAGCGCAGAGGAAAGC 1093
| | ||| || || ||||||||||| |||||||| ||||| ||||| |||||||| ||
Sbjct 842 TAGGAGAGCGAAGGCGATGGAGAAAACACAAAACAAAGTGGCAAAAGCTCAGAGGAAGGC 901
Query 1094 GGAAGAGAGAAAAGCGACGGCAG-AGGCAAAGAGAGGGACAGAGGTTGCAAAAGTAGTTG 1152
||| ||||| | ||| ||||| | ||| ||| ||||||| |||||||| | || |||
Sbjct 902 GGAGGAGAGGAGAGCCACGGCGGAAGGTAAA-CGAGGGACGGAGGTTGCGAGGGTTCTTG 960
Query 1153 AAGTTGCTAATCTCATGAGAGCCGTTGGACGTCCTCCTGCCAAACGCTCCTTCTTCTCT- 1211
||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 961 AAGTTGCTAATCTCATGAGAGCCGTTGGACGACCTCCGGCCAAACGATCATTCTTCTCTC 1020
Query 1212 TTCTCCTAG 1220
|| ||||||
Sbjct 1021 TT-TCCTAG 1028
Score = 91.6 bits (49), Expect = 2e-17
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 592 CTTCTTCCGGCGAAAACTTCACAACAATAAGCAGAGAGTTCAACGCTCTAGTCATCGCCG 651
|||||||||| || || ||||| || | |||||||||||||||||||||||||||||||
Sbjct 355 CTTCTTCCGGTGAGAATTTCACCACCGTGAGCAGAGAGTTCAACGCTCTAGTCATCGCCG 414
Query 652 GCTCCTCCATGGAAAACAA 670
| || |||||||| |||||
Sbjct 415 GATCTTCCATGGACAACAA 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67670334660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5