BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483290 Length=1143 Score E Sequences producing significant alignments: (Bits) Value AT2G42040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (Inte... 1522 0.0 > AT2G42040.1 | Symbols: | CONTAINS InterPro DOMAIN/s: WRC (InterPro:IPR014977); Has 219 Blast hits to 219 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr2:17543034-17545230 FORWARD LENGTH=1225 Length=1225 Score = 1522 bits (824), Expect = 0.0 Identities = 1040/1135 (92%), Gaps = 51/1135 (4%) Strand=Plus/Plus Query 21 AAAAAGAGCTCACAACAAGAACACAACACCACCCACAAAGCCTTCTCCTTTATTTTTTCC 80 |||||||||||||||||||||||| | | || ||||||||||||| |||||||||||| Sbjct 47 AAAAAGAGCTCACAACAAGAACAC-A-A-CA-CCACAAAGCCTTCCCCTTTATTTTTT-T 101 Query 81 CAAGTCCGTGTAACCaaaaacaaaaaaaaaaGATTA--CTCTC-TTAATATCTGGGTTTA 137 | |||||||||| |||| ||| |||||||||| ||||| |||||||||||||||| Sbjct 102 C----CCGTGTAACC-AAAA-AAATCAAAAAGATTACTCTCTCTTTAATATCTGGGTTTA 155 Query 138 TACTACAGTCCTTCTTTGGTGCaaagatcccaaaaaa-caaaatcgaaagacagaa-aag 195 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || Sbjct 156 TACTACAGTCCTTCTTTGGTGCAAAGATCCCAAAAAATCAAAATCGAAAGAGAGAATAA- 214 Query 196 a-aaagaaggaagaaTC-TT-TCTGCTATATCTCCCGATGAGGATCCGGAAACGACAAGT 252 | || ||||||||||| || |||||| | |||| ||||||||||||||||||||||||| Sbjct 215 ATCAA-AAGGAAGAATCTTTATCTGCT-T-TCTCTCGATGAGGATCCGGAAACGACAAGT 271 Query 253 GCCTCTTCCTCTT-GCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 311 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 272 GCCTCTTCCT-TTATCGTCTCTATTACCAGTTCCTCTATCAGATCTCTACTTTAACCGCT 330 Query 312 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAGAGACGGAGGTGAAGGTTTTG 371 ||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||| Sbjct 331 CACCGACGGCCACCGCGAGATACTTTCGCGGTGGTTATAAAGACGGCGGTGATGATTTTG 390 Query 372 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCTCCGATTTCTGATCGGCTGATTCAAAGAG 431 ||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| Sbjct 391 GTTCTCTTCAGCTTTCGCTTCCGCCGCCGTCGCAGATTTCTGATCGGCTTATTCAAAGAG 450 Query 432 ATTTGAT---GAAGAAGAAGGAGGTCGAGGCTTTGGATGATAATGGTCGTGATGGTGATG 488 ||||||| ||||||| |||||||| |||||||||||| || | | ||||||||| Sbjct 451 ATTTGATAAAGAAGAAGGAGGAGGTCAAGGCTTTGGATG---AT-G--ATAATGGTGATG 504 Query 489 TAGACGTGATGAGTCGTACTGATGCTTCGGGCAGCAAGAATGCTAATCTCCGAGGAGAGT 548 ||||||| | ||||||||||||||| |||||||||||||||| ||||| ||||||||| | Sbjct 505 TAGACGTCAAGAGTCGTACTGATGCATCGGGCAGCAAGAATGTTAATCCCCGAGGAGAAT 564 Query 549 CCGACTCTTCAACACAAGTTGTCGAGAAGAATGAAAAGGTTGCATCTTTGAGGAAGAGAA 608 ||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 565 CCGTCTCTTCAATACAAGTTGTCGAGAAGAATGAAAAGGTTGTGTCTTTGAGGAAGAGAA 624 Query 609 GAGGCTTTATAAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 668 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 GAGGCTTTATCAACTTTGAGGATTACGAAGATGAGGAAGATGAAGAAGCTAGTGGCGGTG 684 Query 669 GAGG-CG--GTAATAAAGGGAAAAAGAAAGGGAAAAAGAACGGTGGTGCGTTAGAGGAAG 725 |||| || |||||||||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 685 GAGGCCGTATTAATAAAGGGAAAAAGAAAGCGAAAAAGAGCGGTGGTGGGTTAGAGGAAG 744 Query 726 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 745 GATCACGGTGCAGCCGTGTTAACGGTAGAGGATGGAGATGTTGTCAGCAAACGCTTGTTG 804 Query 786 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 GTTATTCTCTTTGTGAGCATCATCTCGGTAAAGGAAGGGTAAGGAGCATGAACAAGAGTG 864 Query 846 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTGA 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 865 GTGGTGGTCGTGGCGGCGAGAAAAAGGCGGTGGTGGTGGAAGTGAAGAAGAAGAGAGTAA 924 Query 906 AGCTTGGGATGGTAAAGGCACGTTCGATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 965 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 925 AGCTTGGCATGGTAAAGGCACGTTCAATAAGTAGTTTGCTTGGACAAACCAGCACTAGTG 984 Query 966 GTGGTA---GTGGTGATGTTGA---GGGTGAGATAAGTGCACCTGCTGATCAGTTTGCTG 1019 |||||| ||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 985 GTGGTACTAGTGGTGATGTTGATCAGGGTGAGATAAGTGCACCTGCTGATCAGTTCGCTG 1044 Query 1020 CATGTGATAGGTAAGTCTGTTGACCAGCATTTGCATGTATATG--T-T-T--ATGTACAT 1073 ||||||||| ||| ||||||||| ||||||||||||||||||| | | | |||| || Sbjct 1045 CATGTGATAAGTAGGTCTGTTGATCAGCATTTGCATGTATATGGATATGTGTATGTTTAT 1104 Query 1074 TGTACATGATGATAATGGACATAGCTCTATGTATTGGGTGTGTGAACATGT-TAT 1127 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1105 -GTACATGATGATAATGGGCATAGCTCTATGTATTGGGTGTGTGAACATGTCTAT 1158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56074008765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5