BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483311
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42220.1 | Symbols: | Rhodanese/Cell cycle control phosphat... 1238 0.0
> AT2G42220.1 | Symbols: | Rhodanese/Cell cycle control phosphatase
superfamily protein | chr2:17592038-17593500 FORWARD LENGTH=967
Length=967
Score = 1238 bits (670), Expect = 0.0
Identities = 751/789 (95%), Gaps = 9/789 (1%)
Strand=Plus/Plus
Query 1 GTGGTTCTTGTCCAAGTAACTATCGCATCACAGTGAGTGACCGAGTTCTTTTTCC-AGAG 59
||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||
Sbjct 2 GTGGTTCTTGTCCAAGTAACTATCGCATCAC----AGTGA-CGAGTT-TTTTTCCTAGAG 55
Query 60 ACCTCTGCAGCGATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 119
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 ACCTCTGCTGCAATGGCGGGGATCATAAGCCCTAGCCCTACGGCTCTTTATTTCACCAGT 115
Query 120 AATGTCGGCGGGAGGCGGTTGAAAGCGGTGAGCTGGGCGGGGAAGAGTGTCTCCGGGAAC 179
|||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 116 AATGTCGGTGGGAGGCGACTGAAAGCAGTGAGCTGGGCGGGAAAGAGTGTCTCCGGGAAC 175
Query 180 GCAATCCGCCGGAGAAACTTGAGGATTGCGGCGGAAG-TGAAATTCGTGAATGCAGAAGA 238
| ||||||||||||| |||||| ||||| |||| || ||||||||||||||||||||||
Sbjct 176 GTTATCCGCCGGAGAAGCTTGAGAATTGCTGCGG-AGCTGAAATTCGTGAATGCAGAAGA 234
Query 239 AGCAAAGCAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 298
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AGCAAAACAGTTAATAGCTGAAGAAGGTTACTCGGTGGTGGATGTAAGAGACAAGACTCA 294
Query 299 GTTCGAGAGAGCTCATATCAAATCTTGCTCCCATATCCCTCTCTTCATTTACAACGAAGA 358
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 295 ATTCGAGAGAGCTCATATAAAATCTTGCTCCCATATTCCTCTCTTCATTTACAACGAAGA 354
Query 359 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 CAACGATATTGGCACGATCATAAAGAGGACAGTGCACAACAATTTCTCAGGGCTCTTCTT 414
Query 419 TGGTTTGCCTTTCACGAAAGTGAATCCGGACTTCCTTAAATCCGTTAGAAACGAGTTTTC 478
|||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 415 TGGTTTACCTTTCACGAAAGTGAATCCGGAATTTCTTAAATCTGTTAGAAACGAGTTTTC 474
Query 479 TCAAGACCGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 538
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TCAAGACAGCAAACTTTTACTTGTTTGCCAAGAAGGTCTCAGATCTGCAGCTGCAGCTAG 534
Query 539 TAGATTGGAGGAAGCAGGTTACGAAAACATCGCTTGTGTAACGTCAGGGCTACAATCTGT 598
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 535 TAGATTGGAGGAAGCAGGTTACGAAAACATTGCTTGTGTAACATCAGGGCTACAATCTGT 594
Query 599 AAAACCAGGGACATTTGAATCGGTTGGTTCCACCGAGTTGCAGAATGCAGGCAAAGCAGG 658
||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 595 AAAACCAGGGACATTTGAATCCGTCGGTTCCACTGAGTTGCAGAATGCAGGCAAAGCAGG 654
Query 659 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGAACAGTGCTCGTGTGTGCTTA 718
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 655 GCTTATCACAATTCAAGGCAAGATCTCAGCAGTCTTAGGGACAGTACTCGTCTGTGCTTA 714
Query 719 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TTTGTTCATACAGTTCTTCCCGGACCAAGCAGAGAAGCTCTTTCCTCCAACAAGCTAAGA 774
Query 779 CAAGACAAA 787
|||||||||
Sbjct 775 CAAGACAAA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5