BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483329
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT2G42360.1 | Symbols: | RING/U-box superfamily protein | chr2... 1347 0.0
> AT2G42360.1 | Symbols: | RING/U-box superfamily protein | chr2:17640798-17641790
FORWARD LENGTH=993
Length=993
Score = 1347 bits (729), Expect = 0.0
Identities = 895/977 (92%), Gaps = 4/977 (0%)
Strand=Plus/Plus
Query 1 AAAATAAGATATTCTAAAAGTCCTTTATTCCCTCATATAATACATCAGAAGTTAGTAACC 60
||||||||| |||||| |||||||||||| ||| |||||||| |||| |||||||||| |
Sbjct 1 AAAATAAGAAATTCTATAAGTCCTTTATT-CCTTATATAATAAATCATAAGTTAGTAAAC 59
Query 61 AATTTTGTTCACTTTCCTTTCCCATCCACTGAAGaaaaa-aaGCTTCACAATGAGCTCCA 119
||||||||||||| |||| ||||||| ||||||||| |||||||||||||||||||
Sbjct 60 TCTTTTGTTCACTTTTCTTTTGCATCCACCGAAGAAAAACCAGCTTCACAATGAGCTCCA 119
Query 120 ACGACAGAGATCCTCACTGGTTTAACTCCCAACACCACTCGTTCTGGCCTAATCCGTCTA 179
|||||||||||| || | |||| ||||| | |||||||| |||||||||||||||||||
Sbjct 120 ACGACAGAGATCATCGCAGGTTCAACTCTGACCACCACTCATTCTGGCCTAATCCGTCTA 179
Query 180 GTTACGATCTTAACAGCAAGATCATGCTAGCCGCCGTGGCTTCTTTATCCGGAGTTATCC 239
||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 180 CTTACGATCTTAACAGCAAGATCATGCTTGCCGCAGTGGCTTCTTTATCTGGAGTTATCC 239
Query 240 TCATCGTCTTCGCTCTTCATCTCTACGCAAGATTCGTTCTCCGCCGCCGTAGAGAAGCTT 299
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 240 TCATCGTCTTCGCTCTTCATCTTTACGCAAGATTCGTTCTCCGACGCCGTAGAGAAGCTT 299
Query 300 TCCGTGGTCTCCCCGTCGTGTTCCGCCACTCTTTTGAGACGCCAAAGCGTGGCCTCAATC 359
||||||| ||||||||| | ||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 300 TCCGTGGCCTCCCCGTCATTTTCCGCCACCCTTTTGAGATGCCTAAGCGTGGCCTCAATC 359
Query 360 CGGCAGTCATCGCTTCTCTCCCTACTTTCACTGTTAGAACCACTGATGGCGTGGCTACAT 419
| |||||||||||||||||||||||||||||||| || ||||||||||||||||| | |
Sbjct 360 CCACAGTCATCGCTTCTCTCCCTACTTTCACTGTTGGAGCCACTGATGGCGTGGCTGCCT 419
Query 420 CCGCTACTGAATGCGCAGTGTGTCTAAGCGTCTTAGAGGAGCAAGACACGGCAAGAGAGT 479
||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||
Sbjct 420 CCGCTACTGAATGCGCAGTGTGTCTAAGCGTGTTAAAGGAGCAAGACAAGGCGAGAGAGT 479
Query 480 TGCCCAATTGCAAGCACATCTTCCACGTCGACTGTGTTGACACTTGGCTCACCACTTGCT 539
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 TGCCCAACTGCAAGCACATCTTCCACGTCGACTGTGTTGACACGTGGCTCACCACTTGCT 539
Query 540 CCACTTGTCCTGTTTGTCGGACCGAAGTTGAGCCAAGACCGAGACTTGAGCCTGAGCCAA 599
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 CCACTTGTCCTGTTTGTCGGACTGAAGTTGAGCCAAGACCGAGACTTGAGCCTGAGCCAA 599
Query 600 GGGAAGGACCAGTGGGTACTGCACCGCCGTTGTTGGAGGAAACCAGGCTGAATTTGACAG 659
||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||| |
Sbjct 600 GGGAAGGACCAGTCGGTACTGCACCGCAGTTGTTGGTGGAAACCAGGCTGAACTTGACTG 659
Query 660 TAGAAGCGGGGGCCTCTTCTTCCTCGGATAACAAAACAGTTGTGTCCTCGGCTTCGCGAT 719
||||||| | ||||||||||||| ||||||||||||||||| ||| ||||||||||||
Sbjct 660 TAGAAGCCGCATCCTCTTCTTCCTCAGATAACAAAACAGTTGTATCCCCGGCTTCGCGAT 719
Query 720 TAAATTCGTTTAGGAAGATCTTGACAAGGGAAAGATCTTCGAACAGGATCAATCATTCTT 779
|||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 720 TAAATTCGTTTAGGAAAATCTTGACGAGGGAAAGATCTTCGAACAGGATCAACCATTCTT 779
Query 780 GTGTTGACCAAGATCGTGTAGCGGATCTTGAGAGACATTGAGTCGACATAGAGATACATA 839
|| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 780 GTCCTGACCAAGATCGTGTGGCAGATCTTGAGAGACATTGAGTCGACATATAGATACATA 839
Query 840 TAATGCATATAAATCATATACACACATCGATAATCTTTAATTTATACTATA-CCTTCCTT 898
| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||
Sbjct 840 TTATGCATATAAATCATATACACATATCGATAATCTTTAATTTATACAATATCCT-CCTT 898
Query 899 TCTTTCTTACTAAATCATTCTCTGTTTTTGGTTTTGGATAGTTTTGTGCAATGGAACACT 958
||||| |||||| ||||| |||||||||||||||| |||||||||||| || ||||||||
Sbjct 899 TCTTTTTTACTATATCATGCTCTGTTTTTGGTTTTAGATAGTTTTGTGTAACGGAACACT 958
Query 959 ATTTATATGCTAGTCAA 975
| |||||| |||||||
Sbjct 959 AAATATATGTTAGTCAA 975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5