BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483355 Length=1152 Score E Sequences producing significant alignments: (Bits) Value AT2G42590.3 | Symbols: GRF9, GF14 MU | general regulatory facto... 1432 0.0 > AT2G42590.3 | Symbols: GRF9, GF14 MU | general regulatory factor 9 | chr2:17731855-17733967 REVERSE LENGTH=1332 Length=1332 Score = 1432 bits (775), Expect = 0.0 Identities = 913/977 (93%), Gaps = 19/977 (2%) Strand=Plus/Plus Query 1 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCTGTGTCTG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 19 AACCCGCGTTAATTACGCTTGTGTCCCTACGCGCGTCTCAAAGATCTCTCTCT-TCTCTG 77 Query 61 GAG-aaaaa-aaaaCAAAAGAAGAGCGTTCGTCGAGAGATATACATACTCGGATCAGTCG 118 ||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 78 GAGAAAAAATAAAACAAAAGAACAGCGTTCGCCGAGAGATATACATACTCGGATCAGTCG 137 Query 119 TCAAAA-C-TCAAAAGCTTTGGA-A--TTTGA---TACTA-AATCTTGAAAAATCAGTCA 169 |||||| | | || ||| || | ||||| | | | ||||||| ||||||||||| Sbjct 138 TCAAAAGCTTTGGAA--TTT-GATACTTTTGATTTTTCGAGAATCTTG-AAAATCAGTCA 193 Query 170 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 194 TGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTG 253 Query 230 AGCGCTATGAAGAAATGGTGGAATCAATGAAAAATGTTGCGAAATTGAATGTTGATCTGA 289 |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 254 AGCGTTATGAAGAAATGGTGGAATCAATGAAAAGTGTTGCGAAATTGAATGTTGATCTGA 313 Query 290 CGGTGGAAGAGAGGAATTTGCTCTCTGTGGGATACAAGAACGTGATTGGTTCAAGGAGAG 349 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 314 CGGTGGAAGAGAGGAACTTACTCTCTGTGGGTTACAAGAACGTGATTGGTTCAAGGAGAG 373 Query 350 CTTCCTGGAGGATATTCTCGTCGATCGAACAGAAAG-AAGCAGTGAAAGGGAATGATGTT 408 |||| |||||||| ||||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct 374 CTTCGTGGAGGATCTTCTCGTCGATTGAACA-AAAGGAAGCAGTGAAAGGGAATGATGTT 432 Query 409 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTGGAGCTTTCAAACATATGC 468 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 433 AATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTAGAGCTTTCTAACATATGC 492 Query 469 ATTGATATAATGTCTGTGTTAGATGAGCATCTGATTCCATCGGCTTCCGAGGGTGAATCA 528 |||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 493 ATTGATATTATGTCTGTCTTAGATGAGCATCTCATTCCTTCGGCTTCCGAGGGTGAATCT 552 Query 529 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCGGAGTTCAAATCA 588 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 553 ACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCTGAGTTCAAATCA 612 Query 589 GGGAATGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 648 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 613 GGGAACGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACT 672 Query 649 GCTGCTGAGGCTAAACTCCCTCCTACACATCCTATCAGATTGGGTTTGGCTTTGAATTAC 708 |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| | Sbjct 673 GCTGCTGAGGCTAAGCTCCCTCCAACACACCCTATCAGATTGGGTTTGGCTTTGAATTTC 732 Query 709 TCTGTCTTCTACTATGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCGAAGCAG 768 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 733 TCTGTCTTCTACTACGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCTAAGCAG 792 Query 769 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAATGAGGAATCCTACAAAGACAGC 828 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 793 GCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAACGAGGAATCCTACAAAGATAGC 852 Query 829 ACCTTAATTATGCAACTCCTCAGGGACAATCTGACCTTGTGGACTTCTGACATCCCAGAA 888 |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 853 ACCTTAATAATGCAACTCCTTAGGGACAATCTGACCTTGTGGACTTCTGACATCTCAGAA 912 Query 889 GAAGGAGCAGATGATGCCCATAAGACAAATGGTTCTTCCAAAGCTGGTGCAGGTGGAGAT 948 ||||||| ||| ||||| |||||||| ||||||||| ||||| ||||||| |||||||| Sbjct 913 GAAGGAGGAGACGATGCTCATAAGACGAATGGTTCTGCCAAACCTGGTGCTGGTGGAGAC 972 Query 949 GATGCTGAGGTAAAGTA 965 ||||| ||||||| ||| Sbjct 973 GATGCAGAGGTAA-GTA 988 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56525813670 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5