BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483374 Length=1093 Score E Sequences producing significant alignments: (Bits) Value AT2G42770.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PM... 1483 0.0 > AT2G42770.1 | Symbols: | Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein | chr2:17798285-17800006 REVERSE LENGTH=1128 Length=1128 Score = 1483 bits (803), Expect = 0.0 Identities = 1029/1129 (91%), Gaps = 51/1129 (5%) Strand=Plus/Plus Query 1 AAATGGACAGGACTCATTTGCGGTTTTAAAGATTTAGGC-AAA-----CTCTGTTTCGAA 54 |||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||| Sbjct 1 AAATGGACAGGACTCATTTGCGATTTTTAAGATTTAGGCAAAACTCTTCTCTGTTTCGAC 60 Query 55 GaaaaaaaGGAAGCATTTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 114 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 G--CAAAAGGAAGCA-TTTTTAATGGACGCATTGGGTGGTTGCGGCGGCGCTGGTGGTTT 117 Query 115 CTGGGGATGGAATGGCTTCGAACAACGGAGAAAGAAGAAGTCTTCCGGCGATAGAGGTAA 174 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 118 CTGGGGATGGAATGGCTTCGATCAACGGAGAAAGAAGAAGTCTTCCGGTGATAGAGGTAA 177 Query 175 GAAAAGGAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 234 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GAAACGTAATTCTGGATCGTCGGATTCCGTCGATGTGAGCAGAGACGCCGGCGGTTATCG 237 Query 235 GTTTCCTTTGAAGCAAGCTGTGACAGCCGGCGCACTCACTTTCACCGGTGACACGATTGC 294 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 238 GTTTCCTTTGAAGCAAGCTGTGACGGCCGGAGCACTCACTTTCACCGGTGACACGATTGC 297 Query 295 TCAGCTATCTGGGAGGTGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 354 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TCAGCTATCAGGGAGATGGAAAAAGAGAACCGCTCTTAAACAATCATCTTCTGAGCTTGA 357 Query 355 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 CGAGGGGGAATTGTGGAACATTTTCTCAGAACATGACTGGATTCGTGCGCTGCGGATGAG 417 Query 415 CTCTTACGGGTTTCTTTTGTATGGCCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 474 |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 418 TTCTTACGGGTTTCTCTTGTATGGTCCTGGTTCTTATGCGTGGTACCAATTCCTTGATCA 477 Query 475 TTCTTTGCCTAAACCAACCGCCACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTGAT 534 |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || Sbjct 478 TTCTTTGCCTAAACCAACTGCGACAAATCTAGTGCTTAAGGTTCTGCTTAACCAAGTAAT 537 Query 535 CCTCGGTCCTTCTGTGATCGCTGTTATATTTGCTTGGAACAACTTATGGCTGGGAAAACT 594 ||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || Sbjct 538 CCTTGGTCCATCTGTGATTGCTGTTATATTTGCTTGGAACAACTTGTGGCTGGGAAAGCT 597 Query 595 CTCTGAGCTCGGAAACAAGTATCAGAAAGATGCTCTTCCAACGCTTCTTTATGGATTTCG 654 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 598 CTCTGAGCTTGGAAACAAGTATCAGAAAGATGCTCTTCCTACGCTTCTTTATGGATTTCG 657 Query 655 CTTTTGGGTTCCCGTTAGCATCCTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGTGTAGC 714 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 658 CTTCTGGGTTCCCGTTAGCATACTTAACTTTTGGGTAGTCCCGCTTCAAGCTCGAGTAGC 717 Query 715 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACAATGAGCAAGTA 774 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 718 GTTCATGTCCATGGGTTCTGTGTTTTGGAACTTCTACTTATCTTCAACTATGAGCAAGTA 777 Query 775 GTTACATATATATTTGTATTCTTCAGCCTCACAGAGTGATAATATATCATTCTGAAAGTT 834 ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| | Sbjct 778 GTTACATTTATATTTGTATTCTTCAGCCTCGCTGAGTGATAATATATCATTCTGAAAGGT 837 Query 835 TTCAA-TACAAAAGTAAGTACTTATAGCCAATA---TATGGAAGGCTCTTCTGATTCTCA 890 ||||| ||||||| || | || || |||| | |||||||||||||||| || |||| Sbjct 838 TTCAAATACAAAATTAC-TG-TT-TA-CCAAGAGACTATGGAAGGCTCTTCTCATCCTCA 893 Query 891 CTCCTTCAGTTTTATTTGCA-TAGCGCA-A-CTAATGTGTTACTCTGATCAAACTCATGG 947 ||||||| ||| |||| | || |||| | ||||||||||||||||||||||||||||| Sbjct 894 CTCCTTCC-TTTC-TTTG-AGTATCGCACAACTAATGTGTTACTCTGATCAAACTCATGG 950 Query 948 AACAAAACTATCTCCTCTAAAAACTTAAGTGTTTA-T-TTTT-CTTGAGT-CAACTACTT 1003 || || ||||||||||||||||||| ||| || | | |||| ||||||| ||||||||| Sbjct 951 AA-AA--CTATCTCCTCTAAAAACTTTAGT-TTGAGTGTTTTTCTTGAGTTCAACTACTT 1006 Query 1004 GCGGGTGTTGTGGAT-ATTAGTT-C-A----TTA--GTATACTGT---A-T----A--AT 1044 | |||||||| |||| ||||||| | | ||| ||||| | | | | | || Sbjct 1007 GTGGGTGTTG-GGATTATTAGTTTCGAGAAGTTACTGTATAATTTTTGAATTTTTATCAT 1065 Query 1045 TTTAACTCTCAGTAACAGATTACTTTAAACTTTTGAATCTTATAACTTA 1093 ||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1066 TTTAACTCTCAGTAACAAATTACTTTAAACTTTTGAATCTTATGACTTA 1114 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53563981515 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5