BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483401 Length=1633 Score E Sequences producing significant alignments: (Bits) Value AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interac... 2158 0.0 AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-... 152 1e-35 > AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting factor 4 | chr2:17886427-17889050 FORWARD LENGTH=1753 Length=1753 Score = 2158 bits (1168), Expect = 0.0 Identities = 1434/1553 (92%), Gaps = 56/1553 (4%) Strand=Plus/Plus Query 131 AGATCTTCTCCTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 190 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 177 AGATCTTCTCTTTCAACTTCTGATTCGTCCAGAAGCTTTCCTAATCTGAGATCTGACATG 236 Query 191 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATA 250 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GAACACCAAGGTTGGAGTTTTGAGGAGAATTATAGTTTGTCCACTAATAGAAGATCTATC 296 Query 251 AGGCCACACGATGAACTAGTGGAGTTGTTATGGCGAGATGGGCAAGTGGTTCTGCAGAGC 310 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 297 AGGCCACAAGATGAACTAGTGGAGTTATTATGGCGAGATGGACAAGTGGTTCTGCAGAGC 356 Query 311 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGAACGTCATGAAGGAA-CCCAAAG 369 |||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||| ||| Sbjct 357 CAAACTCATAGAGAACAAACCCAAACCCAGAAACAAGATCATCATGAA-GAAGCCCTAAG 415 Query 370 ATCCAACACCTTTCTTGAAGATCAAGAAACTGTGTCTTGGCTCCAATACCCTCCAGATGA 429 ||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 416 ATCCAGCACCTTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGA 475 Query 430 AGACCCATTCGAAACCGACGACTTCTCCTCCCACTTCTTCTCAACCGTCGATCCCCTCCA 489 ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 476 AGACCCATTCGAACCCGACGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCA 535 Query 490 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCTGGTCCT-AACCCTCCTCAAGTCATGG 548 ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 536 GAGACCAACCTCAGAGACGGTTAAGCCTAAGTCCAGTCCTGAA-CCTCCTCAAGTCATGG 594 Query 549 TTAAGCCTAAGGCCTGTCCTGA--C-CCTCCTCAAGTCATGCCTCCCCCTAAATTTAGGT 605 |||||||||||||||||||||| | |||||||||||||||||||| || |||||||||| Sbjct 595 TTAAGCCTAAGGCCTGTCCTGACCCTCCTCCTCAAGTCATGCCTCCTCCAAAATTTAGGT 654 Query 606 TAACAAATTCGCCATCGGGAATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACAA 665 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 655 TAACAAATTCATCATCGGGGATTAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCG 714 Query 666 TTGGACCTAGCCATTGCGGGAGCAACCCATCCCAGAACGATCTCGATGTCTCAATGAGTC 725 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 715 TTGGACCTAGCCATTGCGGAAGCAACCCATCACAGAACGATCTCGATGTCTCAATGAGTC 774 Query 726 AAGATCGAAGCAAAAACATAGAAGAAAAGCTTAACCCGAACGCAAGTTCCTCATCAGGTG 785 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 775 ATGATCGAAGCAAAAACATAGAAGAAAAGCTTAATCCGAACGCAAGTTCCTCATCAGGTG 834 Query 786 GCTCCTCTGGTTGCAGCTTTGGCAAGGATATCAAAGAAATGACTTGTGGAAGAAGCATCA 845 ||||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||| Sbjct 835 GCTCCTCTGGTTGCAGCTTTGGCAAAGATATCAAAGAAATGGCTAGTGGAAGATGCATCA 894 Query 846 CAACAGACCGTAAGAGAAAA-GATAT-AATGGACACTGATGACTCTGTATCTCTATCAGA 903 |||| ||||||||||||||| | ||| ||| ||||||| || ||||||||||||||||| Sbjct 895 CAACCGACCGTAAGAGAAAACG-TATAAAT-CACACTGACGAATCTGTATCTCTATCAGA 952 Query 904 TGTAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 963 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 953 TGCAATCGGTAACAAGTCGAACCAACGATCAGGATCAAACCGAAGGAGTCGAGCAGCTGA 1012 Query 964 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTCT 1023 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1013 AGTTCATAATCTCTCCGAAAGGAGGAGGAGAGATAGGATCAATGAGAGAATGAAGGCTTT 1072 Query 1024 GCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1083 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 GCAAGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTTTAGACGAAGCCAT 1132 Query 1084 AGATTATTTGAAATCACTTCAGTTACAACTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1143 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1133 AGATTATTTGAAATCACTTCAGTTACAGCTTCAAGTGATGTGGATGGGGAGTGGAATGGC 1192 Query 1144 GGCGGC------T-C--C---GATGATGTTCCCCGGAGTTCAACCTCCGCCGTTCATACG 1191 |||||| | | | |||||||||||||||||||||||||| || ||||||||| Sbjct 1193 GGCGGCGGCGGCTTCGGCTCCGATGATGTTCCCCGGAGTTCAACCTCAGCAGTTCATACG 1252 Query 1192 TCAGATGCAGAGTCCGGTACAGTTACCTCGATTTCCGGTTATGGATCGGTCTGCAATTCA 1251 |||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1253 TCAGATACAGAGCCCGGTACAGTTACCTCGATTTCCGGTTATGGATCAGTCTGCAATTCA 1312 Query 1252 GAACAATCCCGGTTTAGTTTGTCAGAACCCGATACAAAACCAGATAATCTCCGACCGGTT 1311 ||||||||||||||||||||| || |||||| ||||||||||||| |||||||||||||| Sbjct 1313 GAACAATCCCGGTTTAGTTTGCCAAAACCCGGTACAAAACCAGATCATCTCCGACCGGTT 1372 Query 1312 TGCTAGGTACATCGGTGGGTTCCCACAGATGCAGGCCGCGGCTCAG---C--C-GATGGA 1365 |||||| |||||||||||||||||||| |||||||||||| ||||| | | |||||| Sbjct 1373 TGCTAGATACATCGGTGGGTTCCCACACATGCAGGCCGCGACTCAGATGCAGCCGATGGA 1432 Query 1366 GATGTTAAGATTTGGTTTACCGGCGGGACAGCAAATTCAACAACCG-C--CTGCGCCGAC 1422 |||||| |||||| ||| ||||||||||||||||| |||||||||| | ||| |||||| Sbjct 1433 GATGTTGAGATTTAGTTCACCGGCGGGACAGCAAAGTCAACAACCGTCGTCTGTGCCGAC 1492 Query 1423 GAAGATCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGGCActtttttacttcct 1482 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1493 GAAGACCACCGACGGTTCTCGTTTGGACCACTAGGTTGGTGAGCCACTTTTTTACTTCCT 1552 Query 1483 tatttttggtatgtttgtttttct-tatctat-tta-tGAACATACTTAAAACGTT-A-- 1536 |||||||||||||||| ||||| | ||||||| || ||||||||||||||||||| | Sbjct 1553 TATTTTTGGTATGTTTCTTTTT-TATATCTATCTTTCTGAACATACTTAAAACGTTCAAG 1611 Query 1537 --T--A--------GAGTACAACGTACAACTTCATTACGTTATTTTATGTAT--G--AGT 1580 | | ||||| ||||| |||||||||||||||||||| ||||| | ||| Sbjct 1612 GATGTATTATTATAGAGTA-AACGTGCAACTTCATTACGTTATTTTCTGTATATGTGAGT 1670 Query 1581 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATGTTAAAAA 1633 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1671 TTATGTATGTCAAAATGACATGATGAGATTTTTTGTAAACAACATCTTAAAAA 1723 Score = 169 bits (91), Expect = 1e-40 Identities = 119/131 (91%), Gaps = 7/131 (5%) Strand=Plus/Plus Query 1 ACTTTCTGTCTGTACCCAAAAGAAGTAAAGAACCTCTCTTATCATCTTCTTCTCTGTTTC 60 |||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||| Sbjct 1 ACTTTCTGTCTGTACCCAAAAGAAGTAATGAACCTCTCTCATCTTCTTCTTCTCTGTTTC 60 Query 61 TTTCATGTTTTGTGAGA-GTTTTCTCAACAATTT-CTTGGTCTCTTTAGAGTGAGAGAA- 117 |||||||||||||||| |||| ||||||||||| || |||||||| |||||||||| | Sbjct 61 TTTCATGTTTTGTGAGTTGTTT-CTCAACAATTTTCT-GGTCTCTT-AGAGTGAGAGGAG 117 Query 118 ACGAGATAGAG 128 | ||||||||| Sbjct 118 A-GAGATAGAG 127 > AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like 5 | chr2:8704024-8706547 REVERSE LENGTH=1867 Length=1867 Score = 152 bits (82), Expect = 1e-35 Identities = 158/194 (81%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 952 TCGAGCAGCTGAAGTTCATAATCTCTCCGAAAGGAGGA-GGAGAGATAGGATCAATGAGA 1010 ||| || |||||||||||||||||||| |||| || | ||||||||||||||||||||| Sbjct 858 TCGTGCTGCTGAAGTTCATAATCTCTCTGAAA-GAAAACGGAGAGATAGGATCAATGAGA 916 Query 1011 GAATGAAGGCTCTGCAGGAACTAATACCTCACTGCAGTAAAACTGATAAAGCTTCGATTT 1070 ||||||| ||| |||| ||||| ||||||| ||||| || | |||||||||||||| Sbjct 917 GAATGAAAGCTTTGCAAGAACTTATACCTCGCTGCAACAAGTCAGATAAAGCTTCGATGC 976 Query 1071 TAGACGAAGCCATAGATTATTTGAAATCACTTCAG-TTACAACTTCA-AGTGATGTGGAT 1128 |||| ||||| || || || ||||||| |||||| || ||| | || | |||||| || Sbjct 977 TAGATGAAGCTATTGAGTACATGAAATCTCTTCAGCTT-CAAATACAGA-TGATGTCAAT 1034 Query 1129 GGGGA-GTGGAATG 1141 ||| | |||||||| Sbjct 1035 GGG-ATGTGGAATG 1047 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80672275815 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5