BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483405
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43030.1 | Symbols: | Ribosomal protein L3 family protein |... 1519 0.0
> AT2G43030.1 | Symbols: | Ribosomal protein L3 family protein
| chr2:17894836-17895866 FORWARD LENGTH=1031
Length=1031
Score = 1519 bits (822), Expect = 0.0
Identities = 967/1031 (94%), Gaps = 34/1031 (3%)
Strand=Plus/Plus
Query 1 AAGAGTGTGGCACAGAGCTTTAT-C-CTCTCAGAGTTTCTTCTCCTCTGTGAATCCCCGA 58
||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1 AAGAGTGTGGCACAGAGCTTTATCCTCTCTCAGAGTTTCTTCTCCTCTGTGAATCTCCGA 60
Query 59 CAATGGCGATGGCTATGGCGGTTGTTTCATTCCCATCTCTACTCAACAAATCAACCTTAT 118
|||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 61 CAATGGCGATAGCTATGGCGGTTGTTTCTTTCCCATCTCTGCTCAACAAAACAACCTTAT 120
Query 119 CCTCTTCACTCTTCAC-CCCAACCTTCCTCCCAGCGAAATCCTCTTCCCTTCTCATCAAT 177
|||||||||||||||| ||| || |||||||| |||||||||||||| |||||||||||
Sbjct 121 CCTCTTCACTCTTCACTCCC-ACTTTCCTCCCGGCGAAATCCTCTTCACTTCTCATCAAA 179
Query 178 TCTTCCCCCAAAACCAGATTCGTGGTTTCAGCATCCATGGAAGCTGGAATCGGAGTAATG 237
|| || || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 TCATCACCAAAAACCAGATTCGTGGTTTCATCATCCATGGAAGCTGGAATCGGAGTAATG 239
Query 238 GGTTCAAAACTCGGGATGATGAGTTTCTTCGAAGAAGACGGCACAGTAGTTCCAGTAACA 297
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGGTCAAAACTCGGGATGATGAGTTTCTTCGAAGAAGACGGCACAGTAGTTCCAGTAACA 299
Query 298 GTCGTCGGATTCCGCGAAGGTAACATCGTAACCCAAATCAAAACCCTAGCCACCGACGGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 GTCGTCGGATTCCGCGAAGGTAACATCGTAACCCAAATCAAAACCCTAGCCACAGACGGT 359
Query 358 TACGACGCGGTTCAAATCGGTTACCGTCGTGTACGCGACAAAAAGCTAAGTAAACCGGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 TACGACGCGGTTCAAATCGGTTACCGTCGTGTACGCGACAAAAAGCTAACTAAACCGGAA 419
Query 418 ACCGGTCATCTCCAAAAAGCCGGTACAATCCCAATGAGACATCTCCAAGAGTTCAGATTA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCGGTCATCTCCAAAAAGCCGGTACAATCCCAATGAGACATCTCCAAGAGTTCAGATTA 479
Query 478 ACAAACATCGAAGGATTCGAACCGAACCAGAAGCTTGTGTTCGATGAGATATTCAAAGAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAACATCGAAGGATTCGAACCGAACCAGAAGCTTGTGTTCGATGAGATATTCAAAGAA 539
Query 538 GGTGATCTCGTTGATGTAGCTGGAACTACGATTGGTAAAGGGTTTCAAGGAGGAATCAAA 597
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 540 GGTGATCTCGTTGATGTAGCTGGAACCACAATTGGTAAAGGGTTTCAAGGAGGAATCAAA 599
Query 598 AGACATCATTTCAAGAGAGGTCAGATGACTCATGGTTCCAAGAGTCATCGAGCTTTGGGT 657
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGGCATCATTTCAAGAGAGGTCAGATGACTCATGGTTCCAAGAGTCATCGAGCTTTGGGT 659
Query 658 TCGATTGGTGCTGGTACTACTCCGGGAAGAGTTTACAAAGGGAAGAAGATGCCTGGAAGA 717
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 660 TCGATTGGTGCTGGTACTACTCCGGGAAGAGTTTATAAAGGGAAGAAGATGCCTGGAAGA 719
Query 718 ATGGGAGGGACGAGGACCAAGATTAGGAAGCTTAAGATTGTTAAAGTTGATAAGGAGCTT 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATGGGAGGGACGAGGACAAAGATTAGGAAGCTTAAGATTGTTAAAGTTGATAAGGAGCTT 779
Query 778 AATGTTGTCATGATCAAAGGTGCTTTACCTGGTAAGCCTGGGAATCTTCTTCGTATTACT 837
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 AATGTTGTCATGATCAAAGGTGCTTTGCCTGGTAAGCCTGGGAATCTTCTTCGTATTACT 839
Query 838 CCAGCTAAAATCGTCGGAGTTAACATTCCCAAGAACTAGTAGA-AAAAGACTC------- 889
|| |||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 840 CCCGCTAAAATCGTCGGAGTTAACATTCCCAAGAACTAGTAGAGAAGAGACTCTGTTTTG 899
Query 890 ---TGT--T-TTGA-TT-TG--TA---A-T-GTT---AATTTGTATCGAATTGCTAAATC 931
||| | |||| || || || | | || |||||||||||||||||||||||
Sbjct 900 TTTTGTAATGTTGACTTGTGTTTATCCATTCCTTGAAAATTTGTATCGAATTGCTAAATC 959
Query 932 ACAGTTTC-GTATTAGAATTGGAGTTTTTGTAAAAGTCGGAAATCACTATTCTATGTTAA 990
|||||||| | |||||||||||||||||||| ||||||||| | | | ||||||| |||
Sbjct 960 ACAGTTTCTTTCTTAGAATTGGAGTTTTTGTATAAGTCGGAAGT-A-T-TTCTATGCTAA 1016
Query 991 TGTTCTTGAAT 1001
|||||||||||
Sbjct 1017 TGTTCTTGAAT 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49028527472
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5