BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483415
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1221 0.0
> AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931525-17935686 REVERSE
LENGTH=1132
Length=1132
Score = 1221 bits (661), Expect = 0.0
Identities = 850/936 (91%), Gaps = 34/936 (4%)
Strand=Plus/Plus
Query 1 CATCAGATTAACTTTTGTAGGGTTTTTCTTTTCCGATTTCATGTACCCTCCTAATTCCTC 60
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 8 CATCAGATTAGCTTTTGTAGGGTTTTTCTTTTCCGGTTTCATGTACCCTCCTAATTCCTC 67
Query 61 TAAGTCCACCGCTCCA-GA---CGGCGGCGACGCCTACAGCAATCAATATGACTCAGCCG 116
||||||||||||| || || ||||||||| ||| ||| ||||||||||||||||||||
Sbjct 68 TAAGTCCACCGCT-CATGACGGCGGCGGCGATGCCGACACCAATCAATATGACTCAGCCG 126
Query 117 CCGGAGCCACCCGTGATTTCTCCTCTCTTGCCCCTCAAAGCCACCATTC-TTCACCGCCG 175
| ||||| |||||||||||||||||||||| |||||||| |||||| || | | || |||
Sbjct 127 CTGGAGCTACCCGTGATTTCTCCTCTCTTGGCCCTCAAACCCACCA-TCATCCGCCACCG 185
Query 176 CAGCGGCAGCAGCA-CAATC--C-CAA-CCTCCTCGTCGTCGGCCATTACTTATCTGGCG 230
|||||||||||||| | ||| | || || | | ||||||||||||| ||| | ||||
Sbjct 186 CAGCGGCAGCAGCAGC-ATCAGCAGAATCC-CAACCTCGTCGGCCATTATTTACCGGGCG 243
Query 231 AACCATCTTCCATCGGATTCGATT-C--CGGTGCTTCTTCTTCTTCTTTGTTCCGACACA 287
| |||||||||||||||||||||| | || | ||||||| |||||||||||||||||||
Sbjct 244 AGCCATCTTCCATCGGATTCGATTCCAACGCTTCTTCTTCGTCTTCTTTGTTCCGACACA 303
Query 288 GAAGCTCTCCGGCCGGATTCTACGACCAACATCTTCCCACTGATCCCAACGGAACAGGTT 347
||||||||||||| |||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 304 GAAGCTCTCCGGCTGGATTCTACGACCAACATCTTCCCACTGAT-CC--C--AAC-GGTT 357
Query 348 TTTCTCTAGGACAGCCAAACAGAGGTTACAGCGGCGGCGGAGGAGGAGAG-AGAGCGCCG 406
|||||||||||| ||||||| |||| | | |||||||||||||||| | || ||||
Sbjct 358 TTTCTCTAGGACGGCCAAACGGAGGCT--A----CGGCGGAGGAGGAGAGCA-AGGGCCG 410
Query 407 TCGAGGTTGAAGTCGGAGCTGAGATTCTCTGGCGGCAGTAGTAGTCATCAAGAACATAAG 466
|||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||
Sbjct 411 TCGAGGTTGAAGTCGGAGCTGAGATTCTCTAGTGGGAGTAGTAGCCATCAAGAACATAAT 470
Query 467 TCTCTACCGCGAATTTCGGAGGCTGAAGCGGCTGCGGCGGCTATAAACGGTGTCGCATCG 526
|||||||||||||| ||||||| |||||||||||| ||||||| |||||||||||||||
Sbjct 471 TCTCTACCGCGAATCTCGGAGGTTGAAGCGGCTGCAGCGGCTAGAAACGGTGTCGCATCA 530
Query 527 AGTAGTATGAGTTTTGGAAACCATAATCATAATAACAATTGGGACAACTCGTCTTCTCAT 586
||||||||||||||||| || |||||| || ||||||||||||||||||||||||||||
Sbjct 531 AGTAGTATGAGTTTTGG-AA--ATAATCGTACTAACAATTGGGACAACTCGTCTTCTCAT 587
Query 587 ATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACGTTA 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 588 ATCAGTTTCACCATTGATCAACCCGGAAAACGGTCCAAGAACTCCGACTTTTTCACCTTA 647
Query 647 GAAACTCAGTTTAGCATGCCGCAAACATCTCTGGAAATGGCGAGAATGGAGAACTTGATG 706
|||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 648 GAAACTCAGTATAGCATGCCGCAAACAACTCTGGAAATGGCGACAATGGAGAACTTGATG 707
Query 707 AACATCCCAGAGGACTCGGTTCCTTGTAAGGCTAGGGCTAAGCGCGGCTTCGCGACTCAC 766
|||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||||
Sbjct 708 AACATCCCAGAGGACTCGGTGCCTTGTAGGGCTAGAGCCAAGCGCGGCTTCGCGACTCAC 767
Query 767 CCACGCAGCATCGCTGAAAGGGAGAGAAGAACGAGAATAAGCGGGAAGCTGAAGAAGCTA 826
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 768 CCACGCAGCATTGCTGAAAGGGAGAGAAGAACGAGGATAAGCGGGAAGCTGAAGAAGCTA 827
Query 827 CAAGAACTTGTGCCTAATATGGATAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCT 886
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 828 CAAGAACTTGTGCCTAATATGGACAAGCAAACGAGCTACGCAGATATGTTGGATTTGGCT 887
Query 887 GTTGAGCATATCAAAGGTCTTCAACACCAAGTAGAG 922
||||||||||||||||||||||| ||||||||||||
Sbjct 888 GTTGAGCATATCAAAGGTCTTCAGCACCAAGTAGAG 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5