BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483453
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43430.1 | Symbols: GLX2-1, GLY1 | glyoxalase 2-1 | chr2:180... 2180 0.0
> AT2G43430.1 | Symbols: GLX2-1, GLY1 | glyoxalase 2-1 | chr2:18035369-18038255
REVERSE LENGTH=1387
Length=1387
Score = 2180 bits (1180), Expect = 0.0
Identities = 1334/1405 (95%), Gaps = 24/1405 (2%)
Strand=Plus/Plus
Query 1 GTAAAAGCTGTCTCTCTAGCTCTGACGTTGTTTCCTGTCGAAGTCGCAGACTCGTCATCA 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAAAAGCTGTCTCTTTAGCTCTGACGTTGTTTCCTGTCGAAGTCGCAGACTCGTCATCA 60
Query 61 CAGCTCAGGCGAGAAATTCTGGGTTTCTTCTATCTACGCGCAAAATCTCTCAAA-GAGGC 119
||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||
Sbjct 61 CAGCTCAGGCGAGTAATTCTGAGTTTCTTCTATCTACGCGCAATATCTCTCAAAGGAGGC 120
Query 120 CTCTTCAAAGGTAACACAATCATCTCCTCTCGTTTCTCTATCTGAAGAAAGAATCAGAGA 179
||||||||||||| ||||||||| |||||||| || ||||||| | ||||||| ||
Sbjct 121 CTCTTCAAAGGTACCACAATCATATCCTCTCG-TT-TCTATCT---G-AAGAATC--AG- 171
Query 180 AAAGAAGGAGAGAGATATATAGAGGATGCCTGTGATCTCCAAAGCTTCATCTACCACCAC 239
|| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 --AG-A-GA-AGAGATATATAGAGGATGCCTGTGATCTCCAAAGCTTCATCTACCACCAC 226
Query 240 CAATTCATCGATTCCTTCGTGTTCTAGGATTGGAGGTCAGCTTTGCGTGTGGCCTGGTTT 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 227 CAATTCATCGATTCCTTCGTGTTCTAGGATTGGAGGTCAGCTTTGTGTGTGGCCTGGTTT 286
Query 300 GAGACAACTTTGCCTCAGGAAAAGCTTATTATACGGAGTAATGTGGTTATTATCCATGCC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAGACAACTTTGCCTCAGGAAAAGCTTATTATACGGAGTAATGTGGTTATTATCCATGCC 346
Query 360 TCTGAAAACATTGCGTGGAGCTAGAAAGACCCTTAAAATTACCCACTTTTGTAGCATTTC 419
|||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 347 ACTGAAAACATTGCGTGGAGCTAGAAAAACTCTTAAGATTACTCACTTTTGTAGCATTTC 406
Query 420 CAATATGCCATCCTCATTAAAAATCGAACTGGTGCCCTGCAGTAAGGAAAACTATGCTTA 479
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 407 CAACATGCCATCCTCATTAAAAATCGAACTGGTGCCCTGCAGTAAGGACAACTATGCTTA 466
Query 480 TCTTTTGCATGATGAAGACACCGGAACAGTTGGAGTCGTTGATCCTTCTGAGGCTGCACC 539
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TCTGTTGCACGATGAAGACACCGGAACAGTTGGAGTCGTTGATCCTTCTGAGGCTGCACC 526
Query 540 TGTTATAGAGGCATTGAGCAGGAAAAATTGGAATCTAACTTACATTTTGAATACTCATCA 599
||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 527 TGTTATAGAAGCATTGAGCAGGAAGAATTGGAATTTAACTTACATTTTGAATACTCATCA 586
Query 600 TCATGATGATCACATAGGGGGGAATGCTGAATTGAAAGAAAGGTATGGCGCAAAGGTGAT 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TCATGATGATCACATTGGGGGGAATGCTGAATTGAAAGAAAGGTATGGCGCAAAGGTGAT 646
Query 660 TGGATCAGCTGTGGATAAAGATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGA 719
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TGGATCAGCTGTAGATAAAGATCGGATTCCTGGAATTGACATACTTCTGAAGGATAGTGA 706
Query 720 TAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 TAAGTGGATGTTTGCTGGCCATGAGGTTCGGATACTTGACACTCCTGGCCATACACAAGG 766
Query 780 CCATATTAGCTTCTACTTTCCCGGGTCAGCGACGATATTCACAGGGGACCTGATATATAG 839
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 767 CCATATTAGCTTCTACTTTCCCGGGTCAGCGACAATATTCACAGGAGACCTGATATATAG 826
Query 840 CTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCAGATGCTTTCATCACTCCAAAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CTTATCCTGTGGTACCCTTTCAGAAGGTACCCCTGAGCAGATGCTTTCATCACTCCAAAA 886
Query 900 GATCGTGTCTCTACCAGATGATACAAATATATACTGCGGCCGTGAAAACACAGCAGGCAA 959
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GATCGTGTCTCTACCAGACGATACAAATATATACTGCGGCCGTGAAAACACAGCAGGCAA 946
Query 960 TCTCAAGTTTGCACTATCCGTAGAACCAAAGAATGAAACTCTTCAGTCATATGCAACCCG 1019
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 947 TCTCAAGTTTGCTCTATCCGTAGAACCAAAGAATGAAACTCTTCAGTCCTATGCAACTCG 1006
Query 1020 AGTCGCCCATCTTCGCAGCCAGGGACTCCCATCGATTCCAACGACTGTTAAGGTCGAGAA 1079
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 1007 AGTCGCCCATCTTCGCAGCCAGGGGCTCCCATCGATTCCAACGACTGTCAAGGTTGAGAA 1066
Query 1080 AGCATGTAACCCGTTCCTCAGAACATCGAGCAAAGATATCCGAAAATCTTTAAGCATTCC 1139
||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1067 AGCGTGTAACCCATTCCTCAGAATATCGAGCAAAGATATCCGAAAATCTTTAAGCATTCC 1126
Query 1140 AGACTCAGCAACAGAAGCTGAAGCACTGCGTCGTATACAGAGAGCCAGAGATCGTTTCTG 1199
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1127 AGACTCAGCAACCGAAGCTGAAGCATTGCGTCGTATACAGAGAGCCAGAGATCGTTTCTG 1186
Query 1200 AAAGCTTGGGGTATCTTT-CTTAATTGTATAGAAAAATTTGCAAGTCA-TCATCAGCTGC 1257
||| |||||| ||| ||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 1187 AAAACTTGGG-TATATTTTCTTATTTGTATAGAAAAATTTGCAAGTCAATCATCAGCTGC 1245
Query 1258 AAAGATTGATATGTTATATGTTTTGGGTTTTCTTCAGTTATCCATTTGAA-T-GTGTATT 1315
|||||| |||| |||||||||||||| |||||||||||||| ||||||| | |||||||
Sbjct 1246 AAAGATCAATATTTTATATGTTTTGGGCTTTCTTCAGTTATC-ATTTGAAGTTGTGTATT 1304
Query 1316 CAACACAGAAAACATCTAAATATGTAGTTTCA-CTCAATTATTAAATTATTGAGATTTTC 1374
||||||| |||| |||||||||| |||||| | ||||||||||||||||| |||||||||
Sbjct 1305 CAACACAAAAAA-ATCTAAATATTTAGTTTAAACTCAATTATTAAATTAT-GAGATTTTC 1362
Query 1375 AAGTGTAATTTATGCTTCAACATAC 1399
||||||||| ||||||||||||||
Sbjct 1363 AAGTGTAATGAATGCTTCAACATAC 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68925348285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5