BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483464
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43520.1 | Symbols: ATTI2, TI2 | trypsin inhibitor protein 2... 730 0.0
AT1G47540.2 | Symbols: | Scorpion toxin-like knottin superfami... 207 6e-53
> AT2G43520.1 | Symbols: ATTI2, TI2 | trypsin inhibitor protein
2 | chr2:18068425-18069168 FORWARD LENGTH=590
Length=590
Score = 730 bits (395), Expect = 0.0
Identities = 454/483 (94%), Gaps = 2/483 (0%)
Strand=Plus/Plus
Query 1 TCAAGTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TCAACTCGTGACCCGTGGTTGTCATGATAATTTCTAGACCCAACGATAAAGATAAAATAG 70
Query 61 TACCACCGCACCATAACAAGTGTTGAGCATGAGTCTATATATAAACACATACGTTAACTC 120
|| || ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 71 TAGCATCGCACCACAACAAGTGTTGAGCATGAGTCTATATATATACACATACGTTAACTC 130
Query 121 CAAAGTGAAACAATTAGATTagagactacagagagagagaaagagaga-agaTAGCCATG 179
||||||||||||| |||||||| ||||| |||||| ||| ||| ||| | |||||||||
Sbjct 131 CAAAGTGAAACAAAGAGATTAGAAACTACGGAGAGAAAGAGAGA-AGATATATAGCCATG 189
Query 180 GCAACGAAGTCAGTTTCTACCTTGGCCGTTTCTGTCATCCTCTTTTTGGTTATCTTTGAA 239
|||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 190 GCAATGAAGTCAGTTTCTACCTTGGCCGTTTTTGCCATCCTCTTTTTGGTTATCGTTGAA 249
Query 240 ATGCCAGAGATAAAAGCGCAAGATAGCAAGTGTCTGAAAGAATATGGCGGTAATGTCGGT 299
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 250 ATGCCAGAGATAAAAGCGCAAGGTAGCAAGTGTCTGAAAGAATATGGCGGTAATGTGGGT 309
Query 300 TTCAGTTATTGTGCGCCTCGGATATTTCCGTCGTTCTGTTATCGAAACTGCCGTAAGAAT 359
||||| |||||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 310 TTCAGCTATTGTGCGCCTAGGATATTTCCGTCATTCTGTTATCGGAACTGCCGTAAGAAT 369
Query 360 AAGGGTGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTGGTATGATATGT 419
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 370 AAGGGCGCGAAGGGAGGTAGATGCCGTTCGGGAGGGGCAGGAGCTGGTAGTATGATATGT 429
Query 420 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGCTTTGACGTCAAAC 479
|||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 430 TTATGCGACTACTGCAGCGACAAACCTTAAATCAGATCGTTAAACGTTTTAACCTCAAAC 489
Query 480 GCA 482
|||
Sbjct 490 GCA 492
> AT1G47540.2 | Symbols: | Scorpion toxin-like knottin superfamily
protein | chr1:17455533-17456156 REVERSE LENGTH=479
Length=479
Score = 207 bits (112), Expect = 6e-53
Identities = 227/281 (81%), Gaps = 13/281 (5%)
Strand=Plus/Plus
Query 167 gaagaTAGCCATGGCAACGAAGTCAGTTTCTACCTTGGCCGT-TTCTGTCATCCTCTTTT 225
|||| | ||||||||||||||||||||||||||||| ||| | || | |||||||| |||
Sbjct 1 GAAGTTGGCCATGGCAACGAAGTCAGTTTCTACCTTCGCCATCTTTT-TCATCCTCGTTT 59
Query 226 TGGTTATCTTTG-A-AA--TGCCAGAGATAAAAGCGCAAGATAGCAAGTGTCTGAAAGAA 281
||| |||||||| | || | || |||||| ||||| | ||||| ||||| |||||||||
Sbjct 60 TGGCTATCTTTGCAGAAACT-CCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAA 118
Query 282 TATGGCGGTAATGTCGGTTTCAGTTATTGTGCGCCTCGGATATTTCCGTCGTTCTGTTAT 341
|| ||||| |||| |||||||| || ||||| ||||| ||||| ||| |||||||| ||
Sbjct 119 TACGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGAT 178
Query 342 C-GAAACTGCCGTAAGAATAAGGGTGCGAAGGGAGGTAG-ATGCCGTTCGGGAGGGGCAG 399
| ||| |||||||||||| ||||| ||||| || || || |||||||| |||| | | |
Sbjct 179 CAGAA-CTGCCGTAAGAACAAGGGCGCGAAAGGTGG-AGTATGCCGTT-GGGAAGAGAAC 235
Query 400 GA-GCTGGTGGTATGATATGTTTATGCGACTACTGCAGCGA 439
| ||| |||| | | ||| |||||| ||| |||||||||
Sbjct 236 AACGCTATTGGTGTTAAATGCTTATGCAACTTCTGCAGCGA 276
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5