BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483465
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 773 0.0
> AT2G43540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth stages;
Has 27 Blast hits to 27 proteins in 12 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:18072371-18072963
FORWARD LENGTH=593
Length=593
Score = 773 bits (418), Expect = 0.0
Identities = 497/536 (93%), Gaps = 2/536 (0%)
Strand=Plus/Plus
Query 2 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTCACGGCGATTCTATCCAACTCGCCCGAG 61
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 9 AGAAAAATGGGGATATCGGGTTCAAAGCGAGTTACGACGATTCTATCTAACTCGCCCGAG 68
Query 62 TTTAACTCGGCTTGTGACTCAGCGTACGAGGAGTCTCTTTCTCTTGCACAGCATACTTTC 121
||| ||||||||||||||||||| ||||| || ||||| ||||||||||||||| |||||
Sbjct 69 TTTGACTCGGCTTGTGACTCAGCATACGACGAATCTCTCTCTCTTGCACAGCATGCTTTC 128
Query 122 GCCGGAGTTCGTCCCTACCAGCTCGTCTCCGCCGCCGCTCACATCCACCGGAATCTTTCC 181
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 129 GCCGGAGTTCGTCCTTACCAGCTCGTCTCCGCCGCCGCCCACATCCACCGGAATCTTTCC 188
Query 182 TCTCTCCGGTTCCCTCTAATCACCAGATGGGTCCCTTCTCCTCCGAGTCAATCCCAAGTC 241
|||| || ||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 189 GCTCTTCGTTTCCCTCTAATCACCAGATGGCTCTCTTCTCCTCCGAGTCAATCCCAAGTC 248
Query 242 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCGCAGCAGCGGAGGAGGAGGAGATCCTT 301
||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||
Sbjct 249 GACTCAGCTCTCCGAGTCACCGTCTCTCGAGTCACGGCGGCGGATGAGGAGGAGATCCTC 308
Query 302 GGACCGGAGGAGTTCAAAGAA-TGGGCCGTCGAGGTTTTCGTGGAATCCATAGTGGGAAA 360
|| | ||||||||||| ||| ||||||||||||||||||| |||| || | ||||||||
Sbjct 309 GGGCAAGAGGAGTTCAA-GAAATGGGCCGTCGAGGTTTTCGCGGAAGCCGTTGTGGGAAA 367
Query 361 CGCGAGGAAGACGATAGCGAGTCGGATTCCATTAGGAATCGTTGGAATCGCTGGGATCGG 420
|||||||||||| ||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 368 CGCGAGGAAGACAATAGCGAGTCGGATTCCGTTAGGAATCGTCGGAATCGGTGGGATCGG 427
Query 421 CGCGGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATTGG 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 428 CGCCGTGACTCGGTCGGGTCAAAACTTGATCGGAGCTGCGATTGGTGTGTACGCGATAGG 487
Query 481 AGTTGCTACTTCGGTTTTTCTAAGCCTCTCTGATTAGAATAAAAGATTACGTTGTT 536
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 488 AGTTGCTACTTCCGTTTTTCTAAGCCTCACTGATTAGAAGAAAAGATTACGTTGTT 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26071522293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5