BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483470
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081... 1692 0.0
AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078... 706 0.0
AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521... 320 2e-86
> AT2G43590.1 | Symbols: | Chitinase family protein | chr2:18081331-18082767
REVERSE LENGTH=1074
Length=1074
Score = 1692 bits (916), Expect = 0.0
Identities = 995/1033 (96%), Gaps = 5/1033 (0%)
Strand=Plus/Plus
Query 1 CAAACAATTACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAACAATAACACAAAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTC 60
Query 61 TTAGGTTTCTATTCTGAAACCGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGGTTTCTTTTCTGAAACTGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGT 120
Query 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGCTGGATGCCGATCA 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TGCAGTCAGTTCGGTTACTGTGGTACCGACGATGCATACTGCGGTGTTGGATGCCGATCA 180
Query 181 GGTCCTTGTAGAGGCAGTGGAACCCCGACTGGTGGATCGGTCGGTAGCATTGTGACACAA 240
|||||||||||||| |||||||||||||| || || ||||||||||||||||||||||||
Sbjct 181 GGTCCTTGTAGAGGTAGTGGAACCCCGACCGGAGGGTCGGTCGGTAGCATTGTGACACAA 240
Query 241 GGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAAGATTCTAC 300
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GGTTTCTTTAACAATATTATCAACCAAGCTGGTAATGGTTGCGCGGGGAAAAGATTCTAC 300
Query 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCCGTTACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 ACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCTGTTACC 360
Query 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTAC 420
Query 421 ATAGAAGAAATTAACGGAGCATCACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAGAAGAGATTAACGGAGCAACACGTAACTACTGCCAGAGCAGCAACACACAATACCCA 480
Query 481 TGTGCACCGGGCAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTGCACCGGGAAAAGGCTACTTCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTGGGT 600
Query 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCG 660
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 601 AGCAACCCAACTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAATAGCGTAAGGCCG 660
Query 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGT 720
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 661 GTTCTGAACCAAGGGTTTGGAGCCACCATTAGAGCTATTAATGGAATGGAATGTAACGGT 720
Query 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGTAATTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTT 780
Query 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTaaaaaaaaCTTTGAACCCAAACACGCACA 840
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 781 GGTGTGGACCCTGGTCCTAACCTTAGTTGCTAAAAAAC-CTTTGAACCCAAACACGGACA 839
Query 841 CT-TGTGACGTGGCACGTGATAAG-GATAATAAATTTTAATTTCACACGTATGTACTTTA 898
| |||||||||||| || ||||| || | || | | ||||||||||||||||||||||
Sbjct 840 -TATGTGACGTGGCATGTAATAAGTGAGA-TATACTAAAATTTCACACGTATGTACTTTA 897
Query 899 TGTCGGGTCTCAGTGTTCCCTGCGTCACAAGCAAAAAATGGTTGTAATAAACTTGTGAAA 958
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 898 TGTCGGGTCTCGGTGTTCCCTGCGTCACAAGCAAAAAATTGTTGTAATAAACTTGTGAAA 957
Query 959 GTGATTTTCTTTTCTTATGTGACTTCTTATGGAAGTGAATTTTAAGATTGATAGATGTTT 1018
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 958 GTGATTTTCTTTTCTTATGTGACTTCTTATGAAAGAGAATTTTAAGATTGATAGATGTTT 1017
Query 1019 GAGTTTGACACTT 1031
|||||||||||||
Sbjct 1018 GAGTTTGACACTT 1030
> AT2G43580.1 | Symbols: | Chitinase family protein | chr2:18078649-18080028
REVERSE LENGTH=981
Length=981
Score = 706 bits (382), Expect = 0.0
Identities = 683/823 (83%), Gaps = 41/823 (5%)
Strand=Plus/Plus
Query 15 AAACATGGCTTTCACAAAAATCTCCTTAGTCCTTCTTCTCTGCCTCTTAGGTTTCTATTC 74
||| |||||| |||||||||||| |||| ||||||| || | |||||||||||| |||||
Sbjct 12 AAAGATGGCTCTCACAAAAATCTTCTTAATCCTTCTCCTATCCCTCTTAGGTTTATATTC 71
Query 75 TGAAACCGTCAAGTCTCAAAACTGCGGTTGCGCTCCAAACCTCTGTTGCAGTCAGTTCGG 134
|||||||||||| ||||||||||||| |||||| || ||||| |||||||||||||||||
Sbjct 72 TGAAACCGTCAAATCTCAAAACTGCGATTGCGCCCCTAACCTATGTTGCAGTCAGTTCGG 131
Query 135 TTACTGTGGTACCGACGATGC--A-TACTGCGGTGCT-GGATGCCGATCAGGTCCTTGTA 190
||| || |||||| || ||| | ||||| ||| || | |||| ||||||||||||||
Sbjct 132 TTATTGCGGTACC-AC--TGCAGATTACTGTGGTTCTACG-TGCCAATCAGGTCCTTGTA 187
Query 191 GAGGCAGTGGAACCCCGACTGGT---GGATCGGTCGGTAGCATTGTGACACAAGGTTTCT 247
||| | ||||| |||| || ||| || | ||| |||| || ||||||||| |||||
Sbjct 188 GAGTCGGTGGACCCCCTACCGGTGCCGGTTTGGTTGGTAATATCGTGACACAAATTTTCT 247
Query 248 TTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGG-AAAAGATTCTACACCCGT 306
|||||||||| ||||||||||| |||||||| |||| |||| ||||| || ||||||||
Sbjct 248 TTAACAACATTATCAACCAAGCCGGTAATGGATGCG-CGGGAAAAAGTTTTTACACCCGG 306
Query 307 GACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAATTCCGTTACCAGACGT 366
||||||||| |||||||| | ||||||||||||| |||||| ||| ||||||| ||||||
Sbjct 307 GACTCTTTCATTAACGCCACCAATACTTTCCCCAGCTTTGCTAATACCGTTACTAGACGT 366
Query 367 GAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATTTCTGCTACATAGAA 426
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 367 GAAATTGCTACCATGTTTGCTCATTTCACTTACGAGACAGGACACTTCTGCTACATAGAA 426
Query 427 GAAATTAACGGAGCATCACGTAAC-TACTGCCAGAGCAGCAACA-CA--CAATACCCATG 482
|| || ||||| || |||||| | | ||| || ||| |||| || ||||| |||||
Sbjct 427 GAGATAAACGGGGCGTCACGTGTCATG-TGC--GACCAG-AACAACAGGCAATATCCATG 482
Query 483 TGCACCGGGCAA-AGGCTACT-TCGGTCGTGGTCCGATCCAACTATCATGGAACTACAAC 540
|||||||| ||| || |||| | || ||||||||| ||| |||||||||||||| ||||
Sbjct 483 TGCACCGGCCAAGAG-CTACCAT-GGCCGTGGTCCGCTCCTACTATCATGGAACTTCAAC 540
Query 541 TACGGAGCGTGTGGTCAAAGTCTCGGTCTT-GACCTTCTACGCCAGCCCGAACTTGTCG- 598
|| ||||| || || || |||||||| ||| ||||| |||||||||||||| || || |
Sbjct 541 TATGGAGCATGCGGCCAGAGTCTCGG-CTTAGACCTCCTACGCCAGCCCGAGCTGGT-GA 598
Query 599 GTAGCAACCCAA-CTGTAGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGG 657
|||| |||||| | || ||||||||||||| | |||||||||||||||| | ||| |||
Sbjct 599 GTAGTAACCCAGTC-GTGGCTTTCAGGACGGCTCTGTGGTTTTGGATGAAGAGCGTGAGG 657
Query 658 CCGGT-TCTGAACCAAGGG-TTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTA 715
|| || | ||||||| ||| |||||||||||||| |||||||||| || | || |||
Sbjct 658 CCTGTAT-TGAACCA-GGGATTTGGAGCCACCATAAGAGCCATCAGCGGTTTCGACTGTG 715
Query 716 ACGGT-GGTAA-TTCCGGTGCAGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGG 773
||||| || || || |||| || |||||||||||||| ||||||||||||||||||||
Sbjct 716 ACGGTAGG-AACTTA-GGTGGGGTGAACGCAAGGATTGGCTACTATAGAGACTATTGTGG 773
Query 774 ACAGCTTGGTGTGGACCCTGGT-CCTAACCTTAGTTGCTaaaa 815
||||||||| |||||||||| || ||| | | |||||||||
Sbjct 774 GCAGCTTGGTTTGGACCCTGGCGCC-AACATAACTTGCTAAAA 815
> AT3G47540.2 | Symbols: | Chitinase family protein | chr3:17521029-17522624
FORWARD LENGTH=1024
Length=1024
Score = 320 bits (173), Expect = 2e-86
Identities = 217/239 (91%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 555 TCAAAGTCTCGGTCTTGACCTTCTACGCCAGCCCGAACTTGTCGGTAGCAACCCAACTGT 614
||| ||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 402 TCAGAGTCTCGGTCTCGACCTTCTACGCCAGCCTGAGCTTGTGGGTAGCAACCCAACTGT 461
Query 615 AGCTTTCAGGACGGGTTTGTGGTTTTGGATGAACACCGTAAGGCCGGTTCTGAACCAAGG 674
||||||||||| |||||||| ||||||||| || | |||||||||||| |||||||||||
Sbjct 462 AGCTTTCAGGAAGGGTTTGTCGTTTTGGATTAATAGCGTAAGGCCGGTGCTGAACCAAGG 521
Query 675 GTTTGGAGCCACCATTAGAGCCATCAATGGAATGGAATGTAACGGTGGTAATTCCGGTGC 734
||||||||||| || |||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 522 ATTTGGAGCCACTATAAGAGCCATCAATGGGATGGAATGTAACGGTGGGAATTCAGGTGC 581
Query 735 AGTCAACGCAAGGATTGGATACTATAGAGACTATTGTGGACAGCTTGGTGTGGACCCTG 793
||||| ||||||||||| |||||||||||||||||| |||||||||||||||| ||||
Sbjct 582 GGTCAAGGCAAGGATTGGGTACTATAGAGACTATTGTAGACAGCTTGGTGTGGATCCTG 640
Score = 274 bits (148), Expect = 1e-72
Identities = 224/259 (86%), Gaps = 11/259 (4%)
Strand=Plus/Plus
Query 180 AGGTCCTTGTAGAGGCAG-TGGAACC-C---CGACTGGTGGATCGGTCGGTAGCATTGTG 234
||||||||||| |||| | ||||||| | || ||| | ||| ||| |||||||||||
Sbjct 60 AGGTCCTTGTATAGGC-GCTGGAACCACAAGCG-CTGCCGAATCAGTCAGTAGCATTGTG 117
Query 235 ACACAAGGTTTCTTTAACAACATCATCAACCAAGCTGGTAATGGTTGCGCCGGGAAAA-G 293
||||||||||||||||||||||| ||||||||||| |||||||| ||| | | ||||| |
Sbjct 118 ACACAAGGTTTCTTTAACAACATTATCAACCAAGCCGGTAATGGCTGCAC-GAGAAAAAG 176
Query 294 ATTCTACACCCGTGACTCTTTCGTTAACGCCGCTAATACTTTCCCCAACTTTGCCAA-TT 352
|||| ||||||| ||||||||| || |||| ||||||| ||| || |||||||| || ||
Sbjct 177 ATTCAACACCCGCGACTCTTTCATTGACGCTGCTAATAATTTTCCAAACTTTGC-AAGTT 235
Query 353 CCGTTACCAGACGTGAAATTGCTACCATGTTTGCTCATTTCACTCACGAGACCGGACATT 412
||||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||| |
Sbjct 236 CCGTTACAAGACGTGAAATTGCAAGCATGTTTGCTCATGTCACTCACGAGACCGGACACT 295
Query 413 TCTGCTACATAGAAGAAAT 431
|||||||||||||||||||
Sbjct 296 TCTGCTACATAGAAGAAAT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5