BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483473
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT2G43620.1 | Symbols: | Chitinase family protein | chr2:18093... 1581 0.0
> AT2G43620.1 | Symbols: | Chitinase family protein | chr2:18093770-18095025
REVERSE LENGTH=1036
Length=1036
Score = 1581 bits (856), Expect = 0.0
Identities = 962/1014 (95%), Gaps = 4/1014 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCCCAAAGAGCAGTGTTGAAAAACGCTCTCATCCTTTTTCTCTTCACCTTAACC 60
|||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCTACCCTAAGAGCAATGTTGAAAAACGCTTTCATCCTTTTTCTCTTCACCTTAACC 60
Query 61 ATTATGTCAAAAACCGCGTTTTCGCAACGGTGCAGTACAACCGGATGTGCAGCTAATC-T 119
|| ||| ||||||||| ||||||||||| |||| ||||||||||||||||||| || | |
Sbjct 61 ATCATGGCAAAAACCGTGTTTTCGCAACAGTGCGGTACAACCGGATGTGCAGCCAA-CTT 119
Query 120 ATGCTGCAGCAGATATGGATATTGTGGCACCACAGCCGCCTACTGCGGTACCGGGTGCCG 179
||| ||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 120 ATGTTGCAGTAGATATGGATATTGTGGCACCACAGATGCCTACTGTGGTACCGGGTGCCG 179
Query 180 AAGCGGACCTTGCAGCTCCTCAACCACACCTATCCCACCAACTCCTAGCGGTGGTGCAGG 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AAGTGGACCTTGCAGCTCCTCAACCACACCTATCCCACCAACTCCTAGCGGTGGTGCAGG 239
Query 240 CGGTCTAAACGCTGATCCTCGTGATACAATTGAAAATGTTGTCACACCAGCATTTTTTGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGTCTAAACGCTGATCCTCGTGATACAATTGAAAATGTTGTCACACCAGCATTTTTTGA 299
Query 300 TGGTATCATGAGCAAAGTCGGAAATGGCTGCCCAGCCAAAGGGTTCTACACTCGCCAGGC 359
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 300 TGGTATCATGAGCAAAGTCGGAAATGGCTGTCCAGCGAAAGGGTTCTACACTCGCCAGGC 359
Query 360 TTTCATCGCGGCCGCCCAATCGTTTGAGGCCTATAAAGGAACCGTCGCCAAGCGTGAGAT 419
|||||| ||||| ||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 360 TTTCATTGCGGCTGCCCAATCGTTCGACGCCTATAAAGGAACCGTCGCTAAGCGTGAGAT 419
Query 420 TGCCGCTATGTTGGCTCAATTCTCTCATGAATCTGGAAGTTTTTGCTACAAAGAAGAAAT 479
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCCGCTATGTTGGCTCAGTTTTCTCATGAATCTGGAAGTTTTTGCTACAAAGAAGAAAT 479
Query 480 AGCTAGAGGGAAATACTGCTCACCGAGAACTGCATACCCTTGTACACCGGGAAAAGACTA 539
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 480 AGCTAGAGGGAAATACTGCTCACCGAGCACTGCGTACCCTTGTACACCGGGAAAAGACTA 539
Query 540 CTACGGTCGCGGTCCAATCCAAATCACATGGAACTACAACTACGGTGCAGCCGGAAAGTT 599
|||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 540 CTACGGCCGCGGTCCAATCCAAATCACATGGAACTACAATTACGGTGCAGCTGGAAAGTT 599
Query 600 CCTTGGACTCCCTCTATTGACTGATCCAGATATGGTGGCTCGTAGCCCACAAGTTGCCTT 659
||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 600 CCTCGGACTCCCTCTCTTGACTGATCCAGACATGGTGGCTCGTAGCCCCCAAGTTGCCTT 659
Query 660 TCAGTGTGCCATGTGGTTCTGGAACCTAAATGTTCGTCCAGTCTTGGACCAAGGCTTTGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCAGTGTGCCATGTGGTTCTGGAACCTAAATGTTCGTCCAGTCTTGGACCAAGGCTTTGG 719
Query 720 AGCCACCACTAGGAAGATCAATGGTGGCGAATGCAACGGTAGACGTCCTGCCGCGGTGCA 779
||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct 720 AGCCACCACTAGGAAGATCAATGGTGGTGAATGCAACGGTAGGCGTCCTGCAGCCGTGCA 779
Query 780 GAGCAGAGTAAACTATTACTTGGAGTTTTGCAGGATGCTTGGGATCACTCCTGGAACAAA 839
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||
Sbjct 780 GAGCAGAGTAAACTATTACTTGGAGTTCTGCAGGACGCTTGGGATCACTCCTGGAGCAAA 839
Query 840 TCTTAGTTGTTAAAGATGTTAAAATGTGGT-CATATGACACGGTTTCATAGTATAAGTGT 898
||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 840 TCTTAGTTGCTAAAGATGTTAAAATGTGGTTCGTATGACACGGTTTCATAGTATAAGTGT 899
Query 899 GGTCGTGCACGTGTGACTTTATAACTAAAGGTGTCGAATAAAAA-GATTATGCGGTGTAT 957
|||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 900 GGTCGTTCACGTGTGAGTTTATAACTAAAGGTGTCGAATAAAAAAGATTATGCGGTGTAT 959
Query 958 CCTAATGTACCAATGTGTTGTTTGTATCGGTTGTCATAGAATGAAGAATATCAG 1011
|||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 960 CCTAATGTACCAATGTGTTGTTTGAATCGGTTGTCACAGAATGAAGTATATCAG 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5