BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483511 Length=1217 Score E Sequences producing significant alignments: (Bits) Value AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 1568 0.0 AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 638 0.0 > AT2G43945.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr2:18197844-18200194 REVERSE LENGTH=1227 Length=1227 Score = 1568 bits (849), Expect = 0.0 Identities = 1136/1260 (90%), Gaps = 77/1260 (6%) Strand=Plus/Plus Query 1 TTGTTTTTGTATGCATTTGGTCtgtgtgttgtgttgtgt-T-TTCTTCTTCTT------- 51 ||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 2 TTGTTTTTGTATGCATTTGGTCTGTGTGTTGTGTTGTTTATCTTCTTCTTCTTCAACCCG 61 Query 52 --C---TTCA-ATCCGAC-GGGAAAAGGAGTTCCGACAAAAATCAAGAACTGAAAGATTT 104 | | || ||||||| ||||||| |||||||||||| |||| ||||||||||||||| Sbjct 62 ACCAAATACACATCCGACGGGGAAAAAGAGTTCCGACAAGAATCGAGAACTGAAAGATTT 121 Query 105 GTCATTTGTCTCTCAAATATCTGCGGAGAGAAGAGAAATTATCAAATCAAGAAGACAGTG 164 ||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||||| Sbjct 122 GTCATTTGTCTCTCAAATATCTGTGGAGAGAAGAGAAA-T-TGGAATAAAGAAGACAGTG 179 Query 165 TTGT--------------G-G-GAGAGATGAGTTCGTCTCTACCTCTGAGGCTACTTCTT 208 |||| | | |||||||||||||||||||||||||||||||| ||| Sbjct 180 TTGTGAGAGAGAGAGAGAGAGAGAGAGATGAGTTCGTCTCTACCTCTGAGGCTA---CTT 236 Query 209 CTTCCTCTTACAACTTCTCTGA-TT-T-CTCCTCCT-C-CC-CCAGATTCTTTCCATGCT 262 |||||||||||||||||||||| || | |||||||| | || |||||||||||||||||| Sbjct 237 CTTCCTCTTACAACTTCTCTGATTTCTCCTCCTCCTCCTCCTCCAGATTCTTTCCATGCT 296 Query 263 CCTTC-TCCGTTCAGATCGAAAAACCCTAATTTCAATCGCCGATTGtcttcttcttcttc 321 ||||| | |||||||||||||||||||||||||||| ||||||||| || Sbjct 297 CCTTCGT-CGTTCAGATCGAAAAACCCTAATTTCAAACGCCGATTG------------TC 343 Query 322 ttcttcttctacctcttgttcttcccagtcacagcttctctctGGGAGATTCAGATCCTC 381 |||||| | | ||| ||||||||||||||| |||||| |||||||||||| |||||||| Sbjct 344 TTCTTC-T-T-CCTGTTGTTCTTCCCAGTCGCAGCTTTTCTCTGGGAGATGCAGATCCTA 400 Query 382 TTCTCCGTGTGTTACCATGTGCTTACCTGAACACCCGAGAAATCAAGAGAACACAGAAAT 441 ||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 401 TTCGCGGTGTGTTACCATGTGCTTACCAGAACACATGAGAAATCAAGAGAACACAGAAAT 460 Query 442 CTTGACAGATCAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCAGGCCT 501 |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 461 CTTGACAGATAAAGATGACCACATTGAATGTGTGCTTGAATCGGATGAAGATTCTGGCCT 520 Query 502 CAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 561 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 521 CAGGATTCCGACTCAAGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCAGA 580 Query 562 GCTAAAACCGGCCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAACAAGG 621 ||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||| Sbjct 581 GCTAAAACCCGCTGCTGATGTAGATTACATACAAGAGCTATTGGCGATACAGCAGCAAGG 640 Query 622 GCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 681 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 TCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAACTGAT 700 Query 682 TGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTGCATC 741 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 701 TGAGATACTTAGCTACGCCATGGTTATAACCAAAAATCATATATACACATCAGGTGCATC 760 Query 742 TGGAACTAATGCGGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 801 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 761 TGGAACTAATGCTGCAGTCATCAGAGGTGCATTGAGAGCAGAGAGACCAGAGCTGCTTAC 820 Query 802 AGTAATAT-TACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACTCTTGTCTA 860 |||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 821 AGTAAT-TCTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAAGAACTATTGTCTA 879 Query 861 AAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGCCAGCA 920 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 880 AAGTACAAAACGTGGTAGAAAAGCCACATAATGACCATTTGCCATTGTTAGAAGCCAGCA 939 Query 921 GGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTTTCATG 980 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 940 GGTTGTGTAATATGGACATCATATCACAAGTTCAACAAGTGATCTGCTTCGCGTTTCATG 999 Query 981 ACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGTCACTC 1040 ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1000 ACAGTAAGCTTCTTATGGAGACATGTCAAGAAGCCAAAAATCTGCGCAAGATTGTCACTC 1059 Query 1041 TCTTCTACCTCGATTGATTCTC-T-CACTCTTTTATCTTCTTCTCGTTACAAAACAGAGA 1098 |||||||||||||||||||| | | |||||||| || ||||||||||||||||||||||| Sbjct 1060 TCTTCTACCTCGATTGATTCACATTCACTCTTT-ATTTTCTTCTCGTTACAAAACAGAGA 1118 Query 1099 AGCTAAGATAAGCCTCGTTGTAAATTATGAAAATCTTCTTGATTAAACAAACACACACA- 1157 || ||| | |||| |||||||||||||| |||| ||||||||||||||||||| Sbjct 1119 AGATAA--T---CCTCCTTGTAAATTATGAA--TCTT---GATTAAACAAACACACACAA 1168 Query 1158 CAACCAATTATATTCTTTTGTCTAAATTTTGACACACATCAGTGCTATTTTTATAAGATT 1217 | || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 1169 CCAC-AATTATATTCTTTTGTCTAAATTTTGATACACATCAGTGCTATTTTTATAGGATT 1227 > AT3G59870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G43945.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | chr3:22116109-22118241 REVERSE LENGTH=1308 Length=1308 Score = 638 bits (345), Expect = 0.0 Identities = 491/562 (87%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 500 CTCAGGATTCCGACTCAGGCACAGGCTATCGTTGAAGGATCTGGTTCAGTTGCAGTGTCA 559 ||| ||||||| || || || || ||||||||||||||| |||||||| |||| ||||| Sbjct 499 CTCCGGATTCCAACACAAGCTCAAGCTATCGTTGAAGGACCTGGTTCACTTGCTGTGTCG 558 Query 560 GAGCTAAAACCG-G-CCGCTGATGTAGATTACATACAAGAGCTATTAGCGATACAACAAC 617 |||||| || || | || ||||||||||||| |||||||| || || || ||||| |||| Sbjct 559 GAGCTACAA-CGAGTCC-CTGATGTAGATTATATACAAGAACTGTTGGCTATACAGCAAC 616 Query 618 AAGGGCCTAGATCAATTGGCTTCTTTGGGACAAGAAATATGGGTTTCATGCATCAAGAAC 677 |||| || ||| |||||||||||||||| || |||||||||||||||||||||||||| | Sbjct 617 AAGGACCAAGAACAATTGGCTTCTTTGGAACTAGAAATATGGGTTTCATGCATCAAGAGC 676 Query 678 TGATTGAGATACTTAGCTACGCCATGGTTATAACTAAAAATCATATATACACATCAGGTG 737 | ||| |||| |||||||| || ||||||||||||||||| ||||| ||||||||||||| Sbjct 677 TCATTCAGATTCTTAGCTATGCTATGGTTATAACTAAAAACCATATCTACACATCAGGTG 736 Query 738 CATCTGGAACTAATGCGGCAGTCATCAGAGGTGCA-TTGAGAGCAGAGAGACCAGAGCTG 796 || ||||||| ||||| || || || ||||||||| || |||||||||||||||||||| Sbjct 737 CAGCTGGAACCAATGCAGCTGTTATAAGAGGTGCACTT-AGAGCAGAGAGACCAGAGCTT 795 Query 797 CTTACAGTAATATTACCCCAAAGTTTGAAAAAACAACCTCCTGAGAGCCAGGAACT-CTT 855 |||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| | | Sbjct 796 CTTACAGTTATCTTACCTCAAAGTTTGAAAAAGCAACCTCCTGAAAGCCAGGAACTAC-T 854 Query 856 GTCTAAAGTACAAAACGTGGTAGAAAAGCCACACAATGACCATTTGCCATTATTAGAAGC 915 ||| ||||||||||||||| |||||||||| ||||| |||||||| || ||||||||||| Sbjct 855 GTCAAAAGTACAAAACGTGATAGAAAAGCCTCACAACGACCATTTACCGTTATTAGAAGC 914 Query 916 CAGCAGGCTGTGTAATATGGACATCATATCACAAGTACAACAAGTGATCTGCTTCGCGTT 975 ||||||||| ||||| ||||| |||||||||||||| |||||| | || ||||| ||||| Sbjct 915 CAGCAGGCTATGTAACATGGATATCATATCACAAGTGCAACAAATCATTTGCTTTGCGTT 974 Query 976 TCATGACAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAAAAATCTACGCAAGATTGT 1035 |||||| |||||||||||||||||||||||||||||||||| |||||| || |||||||| Sbjct 975 TCATGATAGTAAGCTTCTCATGGAGACATGTCAAGAAGCTAGAAATCTCCGGAAGATTGT 1034 Query 1036 CACTCTCTTCTACCTCGATTGA 1057 || ||||||||||| |||||| Sbjct 1035 TACCCTCTTCTACCTGGATTGA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59788849095 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5