BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483546
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44230.1 | Symbols: | Plant protein of unknown function (DU... 2612 0.0
> AT2G44230.1 | Symbols: | Plant protein of unknown function (DUF946)
| chr2:18286525-18288400 FORWARD LENGTH=1794
Length=1794
Score = 2612 bits (1414), Expect = 0.0
Identities = 1567/1642 (95%), Gaps = 6/1642 (0%)
Strand=Plus/Plus
Query 1 AATATCAAAATGGGTAACAAATCCTCTGCTCAAAGTTCAACACCTTCTTTGCCGATTGAT 60
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 4 AATATCAAAATGGGTAACAATTCCTCTGCTCAAAGCTCAACACCTTCTTTGCCGATTGAT 63
Query 61 TCTACCTTCAATCTTCCTTCTTCATTACCATCTTGGCCTCCAGGAGAAGGATTTGGGAAA 120
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||
Sbjct 64 TCTACCTTCAATCTTCCTTCTCCATTACCATCTTGGCCTTCAGGAGAAGGATTTGCGAAA 123
Query 121 GGGAGAATCGATTTGGGAGGTCTTGAAGTTTTCCAAGTAGAAACATTTAACAAAGTATGG 180
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 124 GGGAGAATCGATTTGGGAGGTCTTGAAGTTAGCCAAGTAGATACATTTAACAAAGTATGG 183
Query 181 ACTGTATACGAAGGAGGACAAGATAATCTCGGAGCCACTTTCTTTGAGCCGTCTTCAGTA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 ACTGTATACGAAGGAGGACAAGATAATCTCGGAGCCACTTTCTTTGAGCCGTCTTCAGTA 243
Query 241 CCTGAAGGCTTTACGATTCTCGGGTTCTACGCTCAACCTAATAACCGCAAGCTTTTCGGA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 CCTGAAGGCTTTTCGATTCTCGGGTTCTACGCTCAACCTAATAACCGCAAGCTTTTCGGA 303
Query 301 TGGACACTTGTCGGAAAAGACCTCTCAGGCGACTCTTTAAGACCGCCGGTGGATTATCTT 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TGGACACTTGTGGGAAAAGACCTCTCAGGCGACTCTTTAAGACCGCCGGTGGATTATCTT 363
Query 361 CTTCTTTGGAGCGGCAAATCTACAAAGGTAGGGAATAACGGGGTTGAAACTGGATACTTT 420
|| |||||||||||||||||||||||||||| ||| ||| ||||||||| |||||||||
Sbjct 364 CTCCTTTGGAGCGGCAAATCTACAAAGGTAGAGAACAACAAGGTTGAAACAGGATACTTT 423
Query 421 TGGCAGCCTGTACCTCCTGATGATTACAATGCAGTGGGTCTAGTCGTTG-CAACCTCAGG 479
|||||||||||||| ||||||| ||||||||||||||||||| ||| || ||||||| ||
Sbjct 424 TGGCAGCCTGTACCACCTGATGGTTACAATGCAGTGGGTCTAATCG-TGACAACCTC-GG 481
Query 480 -TGAGAAACCTCCTCTAGAAAAGATCCGTTGTGTCCGTTCTGATTTGACAGATCAATCGG 538
|||||||||||||||||| |||||||||||||||||||| || |||| |||||||| |
Sbjct 482 ATGAGAAACCTCCTCTAGACAAGATCCGTTGTGTCCGTTCCGACCTGACCGATCAATCCG 541
Query 539 AGTCTGACGCTCAGATATGGGAATCTAATGGGTTTAGCATTTCGAGTTCTAAACCTGTTA 598
|| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 542 AGCCTGACGCTCTGATATGGGAAACTAATGGGTTTAGCGTTTCGAGTTCTAAACCTGTTA 601
Query 599 ACAGAGGAACACAAGCTTCTGGTGTCTGCGTTGGCACGTTCTTCTCAAACTCTTCAAATC 658
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 602 ACAGAGGAACACAAGCCTCTGGAGTCAGCGTTGGCACGTTCTTCTCAAACTCTCCAAATC 661
Query 659 CAACCTTACCTTGTCTGAAAAACAACAAATTCGATTTTTCTTGCATGCCAAGCAAGCCCC 718
| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 662 CGGCCTTACCTTGTCTGAAAAACAACAACTTCGATTTTTCTTGTATGCCAAGCAAGCCCC 721
Query 719 AGATCGATGCTCTGTTTCAAGCTTACGCCCCTTGGATCTATTTCCACAAAGATGAGAAGT 778
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 722 AGATCGACGCTCTGTTTCAAACTTACGCCCCTTGGATCTATTTCCACAAAGATGAGAAGT 781
Query 779 ATCTCCCATCATCTGTCAACTGGTTCTTCAGCAACGGTGCCTTGCTTTACAAGAAAGGTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 ATCTCCCATCATCTGTCAACTGGTTCTTCAGCAACGGTGCCTTGCTTTACAAGAAAGGTG 841
Query 839 ATGAATCAAACCCAGTTCCAGTCGAACCAAACGGTTTAAACCTTCCCCAAGGTGAATCCA 898
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 842 ATGAATCAAACCCAGTTCCAGTTGAACCAAACGGTTTAAACCTTCCCCAAGGTGAATTCA 901
Query 899 ACGATGGTCTCTACTGGTTAGACCTACCTGTTGCTTCTGACGCAAGGAAACGAGTTCAAG 958
|||| ||||| || |||||||||||||||||||||||||||||||| ||||||| || ||
Sbjct 902 ACGACGGTCTGTATTGGTTAGACCTACCTGTTGCTTCTGACGCAAGAAAACGAG-TCCAG 960
Query 959 -GTGGTGATTTGCAGAGCATGGAAGTGTATCTGCACATAAAACCTGTTTTCGGTGGAACA 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGTGGTGATTTGCAGAGCATGGAAGTGTATCTGCACATAAAACCTGTTTTCGGTGGAACA 1020
Query 1018 TTCACAGACATAGCTGTGTGGATATTTTATCCGTTCAACGGCCCGTCACGAGCCAAGCTC 1077
|||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1021 TTCACAGACATAGCCGTGTGGATGTTTTATCCGTTCAACGGCCCGTCAAGAGCCAAGCTC 1080
Query 1078 AAGGCCGCTACAATTCCGTTGGGGAAAATCGGCGAACACATTGGAGACTGGGAACATTTC 1137
|| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1081 AAAGCCGCTTCAATCCCGTTGGGGAGAATCGGCGAACACATTGGAGACTGGGAACATTTC 1140
Query 1138 ACTCTCCGAATAAGTAACTTCAACGGCAAGTTACATCGGATGTATCTGTCGCAACACAGC 1197
||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1141 ACTCTTCGAATAAGTAACTTCAGCGGCAAGCTACATCGGATGTATCTGTCGCAACACAGC 1200
Query 1198 GGAGGAAGCTGGACTGATGCTTCGGAGATCGAGTTTCAAGGCGGAGGAAACAAACCGGTG 1257
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1201 GGAGGAAGCTGGGCTGATGCTTCCGAGATCGAGTTTCAAGGCGGAGGAAACAAACCAGTG 1260
Query 1258 GCTTATGCTTCTTTGAATGGACATGCAATGTACTCAAAACCGGGACTTGTGTTGCAAGGC 1317
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCTTACGCTTCTTTGAATGGACACGCAATGTACTCAAAACCGGGACTTGTGTTGCAAGGC 1320
Query 1318 AAAGACAATGTGGGGATCAGGAACGATACCGGAAAGAGTGAAAAAGTAATTGATACGGCG 1377
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1321 AAAGACAATGTGGGGATCAGGAACGATACTGGAAAGAGTGAAAAAGTGATTGATACGGCG 1380
Query 1378 GTTAGGTTCAGGGTTGTTGCAGCAGAGTATATGAGAGGAGAAGTGGAGGAGCCGGCTTGG 1437
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1381 GTTAGGTTCAGGGTTGTTGCAGCAGAGTATATGAGAGGAGAATTGGAGGAGCCGGCTTGG 1440
Query 1438 TTGAATTATATGAGACATTGGGGACCAAAGATTGATTATGGTCATGAAAATGAGATTAGA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 TTGAATTATATGAGACATTGGGGACCAAAGATTGATTATGGTCATGAAAATGAGATTAGA 1500
Query 1498 GGTGTGGAGAAGATTATGGTTGGGGAGAGTCTTAAGAATACGTTTAGGAGTGCGATTAAA 1557
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1501 GGTGTGGAGAAGATTATGGTTGGGGAGAGTCTTAAGACTACGTTTAGGAGTGCGATTAAA 1560
Query 1558 GGATTGCCTAACGAAGTTTTTGGAGAGGAAGGGCCTACCGGTCCAAAGCTGAAGCGGAAT 1617
|||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct 1561 GGATTGCCTAACGAAGTTTTTGGAGAGGAAGGACCTACTGGTCCGAAGTTGAAGCGGAAT 1620
Query 1618 TGGTTAGGTGATGAAGTTTGAA 1639
||||||||||||||||||||||
Sbjct 1621 TGGTTAGGTGATGAAGTTTGAA 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81124080720
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5