BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483597
Length=680
Score E
Sequences producing significant alignments: (Bits) Value
AT2G44670.1 | Symbols: | Protein of unknown function (DUF581) ... 924 0.0
> AT2G44670.1 | Symbols: | Protein of unknown function (DUF581)
| chr2:18425180-18426060 FORWARD LENGTH=768
Length=768
Score = 924 bits (500), Expect = 0.0
Identities = 634/693 (91%), Gaps = 32/693 (5%)
Strand=Plus/Plus
Query 1 AGCAAATGGCTTCGTATTACTCTGGtttttttAGTTGTGAAGAGCCACACTTTTTGGAAT 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 95 AGCAAATGGCTTCGTATTACTCTGGTTTTTTGGGTTGTGAAGAGCCACACTTTTTGGAAT 154
Query 61 CTTGTTCTCTTTGCCGTAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 120
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CGTGTTCTCTTTGCCGGAAACACCTTGGTCTTAACTCCGATATCTTCATGTACAGAGGAG 214
Query 121 ACAAGGCCTTTTGTAGCAAAGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 180
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 215 ACAAGGCTTTTTGTAGCAACGAGTGTAGAGAAGAACAGATTGAATCTGATGAAGCTAAGG 274
Query 181 AGAGAAAGTGGAAAAATTCTTCAAGATCTCTCCGCAAAAAATCTTCTGAAACTAAAGAAT 240
|||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 275 AGAGAAAGTGGAAAAAATCTTCAAGATCTCTCCGGAAAAATTCTTCTGAAACTAAAGAAT 334
Query 241 CTGCCGCCGGTAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGTTTTAAT 300
| |||||||| |||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 335 CCGCCGCCGGAAACACCGTACGGACAGGAACTCTCGTCGTGGCTTAGTAGAAGCTTCAGT 394
Query 301 TACATAAAAATTATCAAGCAAATAGtttttttttttttttttATATAAATACCTTTTTGT 360
||||||| | |||||||||||| ||||||| || | ||||||||||||||||||
Sbjct 395 TACATAA---T---CAAGCAAATAGTCTTTTTTTCTTCT---ATATAAATACCTTTTTGT 445
Query 361 CTAAAATCTATAAACCCTCCTAAAACCACTTTATATCTCCAAAGC-T--AAAAGATTTGC 417
||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 446 CTAAAATCTATAAACCCTCCTAAAACCACTT-ATATCTCCAAAGCCTCTAAAAGATTTGC 504
Query 418 TCTGTTTCTATTCATCTTTTTATGGATCGGAGATGACTAGTTTTCAAATTTCCGATTGTC 477
|||||||||||| |||||| |||||||||||||| |||||||||| |||| ||| |||||
Sbjct 505 TCTGTTTCTATTGATCTTTCTATGGATCGGAGATAACTAGTTTTCTAATT-CCGGTTGTC 563
Query 478 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGgagagaga 537
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 564 GGAATCTGAGAAATTGTAGATCTGGTTTATGTAAATGAATGTGGAGTTTTGGGGGC-AGA 622
Query 538 gagaAAGAAAGATGCCAATAATTTTTGGCTGTGTGATGTGATGTGATGGTTTTGTAATCT 597
||||||||||||||| ||||||||| ||||||||||||||||| | | ||| |||||||
Sbjct 623 GAGAAAGAAAGATGCTAATAATTTT-GGCTGTGTGATGTGATG-G-T--TTT-GTAATCT 676
Query 598 GGGGTTGAAATTTTGTTCGATGTTTCCATAATAAACAGAGCATAAC---TATGTTCT-AA 653
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||
Sbjct 677 GGGGTTGAAATTTTGTTCGATGTT-CCATAATAAACAGAGCATAACAACTATGTTCTTAA 735
Query 654 TAAAT-T-----CAATTTCTTTATCTTCGTGTG 680
||||| | |||||||| ||||| ||||||
Sbjct 736 TAAATATAAATTCAATTTCTGTATCTGCGTGTG 768
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32903366285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5