BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg483621 Length=907 Score E Sequences producing significant alignments: (Bits) Value AT2G44920.2 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1177 0.0 > AT2G44920.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr2:18524387-18526827 FORWARD LENGTH=1032 Length=1032 Score = 1177 bits (637), Expect = 0.0 Identities = 736/783 (94%), Gaps = 9/783 (1%) Strand=Plus/Plus Query 1 AAAACaaaaaaaaaTGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 AAAAAAAAAAAAAATGGTAATTCTCAGCAACGTCTCGTTGTTCTCCTGCTGCAACATCTC 79 Query 61 TCAGAAACCATCTCTCTCTTCTCCGTCTTCTCGTAATTCTCATTGTCCCCTTCGTTACTC 120 ||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||| Sbjct 80 TCAGAAACCATCTCTCTTTTCTCCGTCTTCTCGTAGTTCTCATTGTCCCATTCGTTGCTC 139 Query 121 TCAGGTAACCTCGCAGGAAGGAAAAGAAGTTGTTGTTAGTCCTTTGAGAAGTGTGGTTTG 180 || | || |||||||| |||||||| ||| ||||||||||||||||||||||| Sbjct 140 ACA-G-----TCACAGGAAGGGAAAGAAGTGGTTACCAGTCCTTTGAGAAGTGTGGTTTG 193 Query 181 GTCATTAGGAGAAGAGGTTTCTAAGAGAAGTCTACTTGCTCTTGTCTCTGCTTCTCTCTT 240 ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||| Sbjct 194 GTCATTAGGAGAAGAGGTTTCAAAGAGAAGTCTATTTGCACTTGTCTCTGCTTCTCTCTT 253 Query 241 CTTTGCTCATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCATATGGACAAGGAGTCACCAG 300 ||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||| Sbjct 254 CTTTGTTGATCCTGCTCTTGCTTTTAAGGGTGGAGGTCCCTATGGTCAAGGAGTCACCAG 313 Query 301 GGGACAGGACTTATCCGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 360 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 GGGACAGGACTTATCTGGCAAAGATTTCAGTGGCCAGACTCTTATCAGGCAGGACTTCAA 373 Query 361 GACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCGAAGTTGTTAGGTGCTAGCTTCTT 420 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 374 AACGTCCATCCTAAGGCAAGCCAACTTCAAGGGTGCAAAGTTGTTAGGTGCTAGCTTCTT 433 Query 421 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 TGATGCAGATCTAACAGGTGCTGATTTATCGGAAGCTGATCTCCGAGGTGCAGATTTCTC 493 Query 481 CTTGGCAAACGTAACAAAGGTGAATTTAACGAACGCTAACTTGGAAGGAGCGACTGCTAC 540 ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||| Sbjct 494 CTTGGCAAATGTAACAAAGGTGAATCTAACGAACGCTAACTTAGAAGGAGCGACTGTTAC 553 Query 541 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACCGATGTCCCTCT 600 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 554 TGGAAACACATCATTCAAGGGATCAAACATTACAGGCGCAGACTTCACTGATGTCCCTCT 613 Query 601 AAGAGATGATCAACGAGTATACCTTTGCAAAATCGCGGATGGAGTTAACGCGACTACTGG 660 |||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 614 AAGAGATGATCAGCGAGTATACCTTTGCAAAGTTGCGGATGGAGTTAACGCGACTACTGG 673 Query 661 GAATGCAACGCGAGACACATTGCTCTGCAACTAAACTGTGAAATCTAAAGCTTTGGACTG 720 |||||||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||| Sbjct 674 GAATGCAACGCGGGACACATTGCTTTGCAACTAAACTATGAAATGTAAAGCTTTGGACTG 733 Query 721 TTGGAGTCTTCTTCTTATAAttttt-tttCGAGGTTTGAGCATTG-TGAAGCTTGTTGTG 778 | ||||||||||||||||||||||| ||| ||| ||||| ||||| |||||||| ||||| Sbjct 734 TGGGAGTCTTCTTCTTATAATTTTTCTTT-GAGATTTGACCATTGGTGAAGCTTTTTGTG 792 Query 779 CAT 781 ||| Sbjct 793 CAT 795 Score = 93.5 bits (50), Expect = 3e-18 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 849 CTACTGTTTTTTGTTTTATTTATTGGTGTGAATCACAAGTATTATTATGACAttttttt 907 |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 905 CTACTGGTTTTTGTTTTATTTATTGGTCTGAATCACAAGAATTATTATGACATTTTTTT 963 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44306517654 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5