BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg483630
Length=2274
Score E
Sequences producing significant alignments: (Bits) Value
AT2G45000.1 | Symbols: EMB2766 | structural constituent of nucl... 3494 0.0
> AT2G45000.1 | Symbols: EMB2766 | structural constituent of nuclear
pore | chr2:18564111-18567735 FORWARD LENGTH=2368
Length=2368
Score = 3494 bits (1892), Expect = 0.0
Identities = 2157/2285 (94%), Gaps = 18/2285 (1%)
Strand=Plus/Plus
Query 1 CCGCAATGTCGGGGCTTCCATTTGGTCAATCCAATTCCGTTGGAGGTTTCTCATTCGGAT 60
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 41 CCGCAATGTCGGGGTTTCCATTTGGTCAATCCAATTCCGTTGGAGGATTCTCATTCGGAT 100
Query 61 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CTTCTTCTGCAACTAATTCCTCTTCTGCTTCATCTACCACTTCTCCGTTATCTTTCTCCT 160
Query 121 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCACCGTCTCATCAA 180
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 161 TTAACCAATCTTCAAACCCTAGCTCCACCGGATTCGGTTTCGGATCCTCCGTATCATCAA 220
Query 181 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCAACTCCTTCGTTCG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 221 CTCCTGCTTCCTCCACTACTCCATCGTTTGGATTCGGAGCTTCCTCTACTCCTTCCTTCG 280
Query 241 GATTCGGTTCCTCTGCTTC---ATCGACTCCATCGTTCGGATTCGGATCCTCTTCCTCCG 297
|||||||||| |||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 281 GATTCGGTTCTTCTGCTTCTTCATCGACTCCATCGTTCGGATTCGGATCTTCTGCCTCCG 340
Query 298 CGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 TGACTCCTGCTTCCACAACTCCATCGTTTGGATTTGGAACCGCCGCTTCTTCATCTGCTC 400
Query 358 CTGCTCCGTCACTGTTTGGTTCATCTACCACCAATGCTTCTTCTGCTGCTCCTGGTTCTT 417
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 401 CTGCTCCGTCGCTGTTTGGTTCATCTACCACCAATGCTTCTTCAGCTGCTCCTGGTTCTT 460
Query 418 CTCCTTTCGGATTCGTAACTTCTTCGGCCTCTTC-AGCGACTGTTTCAGCTTCATCTCCG 476
||||||||||||| |||||||| ||||||||||| | || | | || | |||||||
Sbjct 461 CTCCTTTCGGATTTGTAACTTCCTCGGCCTCTTCCACCG-CAACTCCATCGTCATCTCTA 519
Query 477 TTTGGAGCTCCCGCTTCTTCCTCTGCAACTCCATCTTCATCTATTTTCGGAGCGGCTCCG 536
||||||||||||||||||||| | ||||||||||| |||||| |||||||| |||||
Sbjct 520 TTTGGAGCTCCCGCTTCTTCCGCCGCAACTCCATCGTCATCTCCATTCGGAGCTGCTCCA 579
Query 537 GCCAGTGGTTCATCATCTCTCTTTGGATCTTCCTCATCCTTATTCTCCGCTCCTTCATCT 596
|||||||||||| || ||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 580 GCCAGTGGTTCAACACCTCTCTTTGGATCTTCCCCTTCCTTATTCTCTGCTCCTTCATCT 639
Query 597 GCTTCCGCCTCGAATTCTTCTCTATTCGGAGCATCCTCATCCGCCGCTGCTTCAACATCC 656
|| |||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 640 GCCTCCGCCTCTAATTCTTCTCTCTTCGGAGCATCCTCATCCGCCGCTACTTCAACATCT 699
Query 657 CCTCTTTTCGGTGCGCCAGCATCAGCCACCGGCTCGACACCGTCCTTTAGCGTGGCCTCA 716
||||||||||| |||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 700 CCTCTTTTCGGCGCGCCATCATCAGCCACCGGCGCAACACCGTCCTTTAGCGTGGCCTCA 759
Query 717 ---GCACCTGGCTCATCATCATCCATCTTTGGAGCCACTAGCTCGTCACCTTCCTTCAGT 773
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 760 TCAGCACCTGGCTCCTCATCATCCATCTTTGGAGCTACCGGCTCGTCACCTTCCTTCAGT 819
Query 774 GTTGCCTCATCAGCCTCTGGCTCATCACCGCCAATCTTTGGAGCCACCGGTTCGTCACCG 833
||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||||||
Sbjct 820 GTTGCCTCATCAGCCTCTGGCTCCTCACCGTCAATCTTTGGAGCTACCGGTTCTTCACCG 879
Query 834 TCAATCTTCGGTTCGTCTTCGTCAGCCGGTTCAACTACGTCTCTCTTTGCATCGTCCTCG 893
| |||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||
Sbjct 880 T---TCTTTGGTTCGTCTTCTTCAGCCGGTTCAACTCCGTCTCTCTTTGCATCTTCCTCG 936
Query 894 TCAGGCACAACAGCTTCTTCACCATCCCCGTTTGGAGTATCCACCATCAATTCCTCAACT 953
|||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 937 TCAGGCGCAACAACTTCTTCACCATCCCCGTTTGGAGTATCCACCTTCAATTCCTCATCT 996
Query 954 GCAACCAATCCCTCGCCTGCCTCAGCTTCTCCTTTCTCCGCTTCTACTGGATTCTCTTTC 1013
|| ||||| ||||| ||||||||||||||| |||||||||||||| || |||||||||
Sbjct 997 ACATCCAATACCTCGAATGCCTCAGCTTCTCCATTCTCCGCTTCTACCGGGTTCTCTTTC 1056
Query 1014 TTGAAAAGCACAGCAAGTTCGACCACCAGCACCACCACTGCTTCTGCTCCTCCACAAACG 1073
||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1057 TTGAAAAGCACTGCAAGTTCGACCACCAGCTCCACCACTCCTTCTGCTCCTCCACAAACG 1116
Query 1074 GCTTCATCTTC-T--TCCTTCTCATTTGGTACATCCGCGAATTCAGGTTTTAACCTTTCA 1130
||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1117 GCTTCATCTTCGTCCTCCTTCTCATTTGGTACATCCGCCAATTCAGGTTTTAACCTTTCA 1176
Query 1131 ACCGGAAGCTCCGCAGCACCTGCATCCAGCACATCCGGAGCAGTGTTTTCTATTGCAACC 1190
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1177 ACCGGAAGCTCCGCAGCACCTGCATCTAGCACATCCGGAGCAGTGTTTTCCATTGCAACC 1236
Query 1191 ACCACCACCACTTCTTCTTCGACTCCGGCTGCCACTAGTGCACCAGCTTCTTCAGCTGCA 1250
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1237 ACCACTACTACTTCTTCTTCGACTCCGGCTGCTACTAGTGCACCAGCTTCTTCAGCTCCC 1296
Query 1251 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGAGTTCATCTGCAACCAACACCAGTCCG 1310
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1297 GCTTCTACAATGGCTTTCCCTTCTTTTGGTGTGACTTCATCTGCAACCAACACCACTCCG 1356
Query 1311 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 GCTAGCTCCGCTGCTACATTCAGTACTACAGGATTTGGTTTGGCTAGCTCGACTCCTGCC 1416
Query 1371 ACTGGATCTACTAAGTCTTTTATTGGGTTTGCTGTACCGCAGACATCAACACCTGCATCA 1430
||||||||||| || ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 1417 ACTGGATCTACGAACTCTTTTACTGGGTTTGCTGTACCGAAGACATCAACACCTGCATCA 1476
Query 1431 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTTCCATCTTCGACTTCT 1490
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1477 TCTTCACAACCACAAACTACTAGTCCTGCATTCTCATTCAGTCTCCCATCTTCGACTTCT 1536
Query 1491 ACTACTGCTCCTGCTACTACTTCTGCTACTACAACACAGACATCTCTTGTTGTGCCTTCG 1550
||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 1537 ACTACTGCTCCTGCTACTAGTTCTGCTACTACAACACAGACAACTCTTGTTGTTCCTTCA 1596
Query 1551 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 AGTAGTGGGACGAGCACAGCTGTTGCTCCAGTGGCTGGTTCTCCAAAGTTGCCATCTGAA 1656
Query 1611 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGT 1670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1657 ATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTACAAGAGCGC 1716
Query 1671 ACAGGGAGATTCCGGAAACAGGCAAATGCAATTGCAGAGTGGGATAAGCGGATCTTGCAG 1730
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1717 ACAGGGAGATTCCGGAAACAGGCAAATGCAATAGCAGAGTGGGATAAGCGGATCTTGCAA 1776
Query 1731 AACCGTGATGTTCTTTTGAGGCTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1790
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AACCGTGATGTTCTTTTGAGACTTGAGATTGAAGTTGCAAAAGTGGTTGAAACCCAATCT 1836
Query 1791 AGCTTGGAACGACAGTTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1850
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1837 AGCTTGGAACGACAGCTGGAATTAATCGAGACTCATCAGCAAGAGGTTGACAAGGCTTTG 1896
Query 1851 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTTGAC 1910
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1897 CAAAGCATGGAGGAAGAGGCTGAGCGTATATATAATGACGAGCGGAAATCACTTCTGGAC 1956
Query 1911 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 1970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 GATGAAGCAGCATCAACTAGAGATGCAATGTATGAACAGTCTGAGCTAGTAGAAAGAGAA 2016
Query 1971 TTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2030
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 CTGGAGCATATGACTGAACAAATCAGATCGATTATACAATCCGTAAATGCAAACCAGGGT 2076
Query 2031 GGAGAACTTGAAGCAATAGATGGGATGAGTCCACTGGATGTAGTTGTCAGAATCTTGAAC 2090
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2077 GGAGAACTTGAAGCGATAGATGGGATGAGTCCACTTGATGTAGTTGTCAGAATCTTGAAC 2136
Query 2091 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 AATCAACTCAGTTCCTTAATGTGGATTGATGAGAAAGCAGAGGAATTCTCTTCTCGGATT 2196
Query 2151 CAGAAAATCGCATCT-CAAGGTTCTGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2209
|| |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2197 CAAAAAATCGCAT-TGCAAGGTTCGGGTGGAGATCGTGAATTGATGGCTCCAAAGCACTG 2255
Query 2210 GATGTCTTGATATGAATTATAAAATCACATCATCAGCTCAGGAAACGAATTATCTTCTTG 2269
|||||||||||| |||||| |||| | || ||| | ||||||||| | ||||||||||||
Sbjct 2256 GATGTCTTGATAAGAATTACAAAAAC-CA-CATAATCTCAGGAAATGGATTATCTTCTTG 2313
Query 2270 TAGTT 2274
|||||
Sbjct 2314 TAGTT 2318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112850825160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5